Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3041 ATGGAGATCAAACCTGGTTTGTCAGCACTAGTCACTGGTGGTGCCACTGGAATCGGCAAGGGTCTTGCCTTAGCTCTTGCAGAGAAGGGTGTATTTATCACTATTGTGGATATTTCTGAAGCAAATGGAAGAGAAGTTGCAAGCCTCGTTGAGAAAATTAACACCAAGTTTCATTCGAAGTTGGAATTTCCCTCTGCGATGTTTGTGAAATGTGATGTGGCTAATGCAAGGGATTTAGCTGCTGCATTTCAAAAGCACTTTTTGACATATCGAGGTCTAGACATTTGTATTAACAGTGCCGGGATTTCTAGTTCTATACCATTCCGCAATGATCAAACAGATGGCACTCAAACATGGAGGCACATAGTTAATGTGAATTTCACTGCTGTTATTGATTCCACTCGCCTTGCGATTAAAGCCATGCAAGCTGCCAAAAGACATGGTGTGATTATCAACTTGGGTTCTGCTTCCGGTCTTTATCCAATGTTCATGGACCCAATCTACAGTGGCTCTAAAGGTGGTGTTGTAATGTTTTCTAGAGCACTTCGTCTATACAAACGTCAGGGAATTCGAGTCAATGTGCTTTGCCCTGAGTTTGTTGAAACCGAGATGGGATTAAAGATAAATCCCAATATGATCAACTTGATGGGGGGCTTTGTATCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATTACGGATGAAAGTAAAGCTGGTCATTGCCTATGGATTACAAATCGTCGGGGTTTTGAGTACTGGCCCACAGCATCTGAAGAAGCAAAGTACCTAGTAGGTTCCTCTCGTTTTAAGAGAAGAGGATCTGATTTCAGAGCTCCATCAATTAAACTTCCTGAGAGTTTTGAGAAAATAGTTGTCCACACCTTGACTCATAACTTTAGGAATGCAACAAGCATAGTGAGAACACCACTAAAATTACCTATCAAGCCGAAACATGTTCTTGTTAAGATAATTTATGCTGGTGTGAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGCGGAAACAACAATGATACTGCCTCTCGTCTTCCATTTGATGCAGGATTTGAGGCTGTAGGAATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAATTGGTATGCCTTGTGCATTCATGACTTTTGGAGGCTATGCTGAATTCATAATGATTTCTTCAAAACATGCCCTTCCGGTTCCTAGACCAGATCCTGAAGTTGTGGCCATGCTTACATCAGGACTAACAGCCTCAATTGCACTAGAAAAGGCAGGACAAATGGAATCTGGAAAAGTGGTCCTTGTAACTGCTGCGGCTGGAGGAACTGGGCAATTTGCTGTTCAGGTAGCAAAATTAGCAGGAAATAGGGTGGTTGCAACTTGTGGAGGTGGGGCAAAGGCCAAGCTTCTGAAGGAGTTGGGAGTTGACAGAGTCATAGACTATCATAATGAAGATATAAAATCTGTTCTGAGGGAAGAGTTCCCAAAAGGTATTGACATCATCTATGAGTCTGTTGGCGGTGATATGTTAAACTTGTGCTTGAATGCTTTGGCAGTTCATGGACGACTCATTATTATTGGCATGATTTCTCAGTATCAAGGAGAAAAGGGTTGGACGCCTTCAAAATACCCTGGCCTATGTGAGAAGCTCTTAGCAAAGAGCCAAACTGTGGCTGGCTTTTTCTTGGTGCAATATGGTCACTTGTGGCAAGAGCATCTTGACAAGCTATTTGATCTTCACTCTACGGGAAAGCTAAAGGTTGCTATTGATCCAAAGAGATTTATAGGTCTGCATTCTGTTGCCGATGCTGTTGAGTATCTCCATTCGGGCAAAAGTGTTGGGAAGGTTGTCGTCTCCGTGGACCCAAACTTCCTTCCTCTAGAGGCCAAATTGTGA 1905 0.4273 MEIKPGLSALVTGGATGIGKGLALALAEKGVFITIVDISEANGREVASLVEKINTKFHSKLEFPSAMFVKCDVANARDLAAAFQKHFLTYRGLDICINSAGISSSIPFRNDQTDGTQTWRHIVNVNFTAVIDSTRLAIKAMQAAKRHGVIINLGSASGLYPMFMDPIYSGSKGGVVMFSRALRLYKRQGIRVNVLCPEFVETEMGLKINPNMINLMGGFVSMEMVVKGAFELITDESKAGHCLWITNRRGFEYWPTASEEAKYLVGSSRFKRRGSDFRAPSIKLPESFEKIVVHTLTHNFRNATSIVRTPLKLPIKPKHVLVKIIYAGVNASDVNFSSGRYFGGNNNDTASRLPFDAGFEAVGIIAAVGDSVTDLKIGMPCAFMTFGGYAEFIMISSKHALPVPRPDPEVVAMLTSGLTASIALEKAGQMESGKVVLVTAAAGGTGQFAVQVAKLAGNRVVATCGGGAKAKLLKELGVDRVIDYHNEDIKSVLREEFPKGIDIIYESVGGDMLNLCLNALAVHGRLIIIGMISQYQGEKGWTPSKYPGLCEKLLAKSQTVAGFFLVQYGHLWQEHLDKLFDLHSTGKLKVAIDPKRFIGLHSVADAVEYLHSGKSVGKVVVSVDPNFLPLEAKL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3041 634 Gene3D - 293 621 - -
Pvu3g3041 634 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Pvu3g3041 634 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Pvu3g3041 634 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Pvu3g3041 634 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Pvu3g3041 634 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Pvu3g3041 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 253 IPR036291 -
Pvu3g3041 634 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 433 454 IPR002364 GO:0008270|GO:0016491
Pvu3g3041 634 SMART PKS_ER_names_mod 295 621 IPR020843 GO:0016491
Pvu3g3041 634 Pfam short chain dehydrogenase 9 210 IPR002347 -
Pvu3g3041 634 CDD Mgc45594_like 287 611 - -
Pvu3g3041 634 Gene3D - 6 265 - -
Pvu3g3041 634 Gene3D - 412 590 - -
Pvu3g3041 634 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 102 627 - -
Pvu3g3041 634 Pfam Alcohol dehydrogenase GroES-like domain 318 382 IPR013154 -
Pvu3g3041 634 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Pvu3g3041 634 PANTHER BNAA08G02470D PROTEIN 102 627 - -
Pvu3g3041 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Pvu3g3041 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Pvu3g3041 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Pvu3g3041 634 Pfam Zinc-binding dehydrogenase 444 578 IPR013149 -
Pvu3g3041 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 409 587 IPR036291 -
Pvu3g3041 634 SUPERFAMILY GroES-like 298 437 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3041 Pvu-Chr3 52068807 52081795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3041 10 212 Acyl Lipid Metabolism Gene Families AT1G24360 31.068 1.10e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3041 - - gmx:100797559 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3041 3 52068807 52081795 Pvu3g3041 3 52068807 52081795 ECH