Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g3012 ATGCCAGGAACAAGTTTCCTTGATTTCCAATACAACCTCTCAAGGAAAAAATACTTGAGGAAGCCATCACGTCTGTTCTCCCGGGACAGGCAGAACTCTGGGCTGAACAGTGTCTGTCTTCAGCCTAACGCTGATGAGATGAAGCGAGTATTTGACAAATTTGATTCCAATAAAGATGGAAAAATTTCTCAGCAGGAGTACAAAGTCACCATGAAGGCTCTAGGCCTGGGAGACTCTGTTCATGAAGTGCCAGATATATTCAAGGTGGTTGATTTGGATGGAGATGGATTCATCAACTTCAAAGAGTTTATGGAGGCTCAGAACAAGGGTGGAGGGGTCAGGGCGATGGATATAAACAGTGCCTTTCGGACGTTTGACAGGAATGGTGATGGGAAAATAAGTGCAGAAGAAATTAGAGAAATGCTGGCAAGGCTGGGAGAAAGGTGCAGCATCGATGACTGTCGGCGAATGGTGAGAGCTGTAGACACTGATGGAGATGGCATGGTTGACATGGACGAGTTCACCACCATGATGACACATAACTTGAGACATGTTTGA 558 0.4552 MPGTSFLDFQYNLSRKKYLRKPSRLFSRDRQNSGLNSVCLQPNADEMKRVFDKFDSNKDGKISQQEYKVTMKALGLGDSVHEVPDIFKVVDLDGDGFINFKEFMEAQNKGGGVRAMDINSAFRTFDRNGDGKISAEEIREMLARLGERCSIDDCRRMVRAVDTDGDGMVDMDEFTTMMTHNLRHV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g3012 185 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Pvu3g3012 185 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Pvu3g3012 185 CDD EFh 121 179 IPR002048 GO:0005509
Pvu3g3012 185 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Pvu3g3012 185 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Pvu3g3012 185 SUPERFAMILY EF-hand 45 180 IPR011992 -
Pvu3g3012 185 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Pvu3g3012 185 SMART efh_1 117 145 IPR002048 GO:0005509
Pvu3g3012 185 SMART efh_1 82 110 IPR002048 GO:0005509
Pvu3g3012 185 SMART efh_1 46 74 IPR002048 GO:0005509
Pvu3g3012 185 SMART efh_1 153 181 IPR002048 GO:0005509
Pvu3g3012 185 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 182 - -
Pvu3g3012 185 Gene3D - 113 184 - -
Pvu3g3012 185 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Pvu3g3012 185 ProSiteProfiles EF-hand calcium-binding domain profile. 78 112 IPR002048 GO:0005509
Pvu3g3012 185 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 3 182 - -
Pvu3g3012 185 Pfam EF-hand domain pair 117 178 IPR002048 GO:0005509
Pvu3g3012 185 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Pvu3g3012 185 CDD EFh 46 106 IPR002048 GO:0005509
Pvu3g3012 185 Gene3D - 5 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g3012 Pvu-Chr3 51850091 51850794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g3012 1 181 EF-hand Containing Proteins AT2G15680 60.541 3.83e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g3012 K13448 - gmx:100803158 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g3012 3 51850091 51850794 Pvu3g3012 3 51850091 51850794 ECH