Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2861 ATGAATCGTAACATGGAGGCAGTGCTGGAAAACCCCGCTAGGTCAAGGGGGTTAAAGTACGCATCCATAAACCCTAACAAACCTCAACCACCCCCGATTCCCAAACCCAACCAATTCCCCTCCCACCTCGACGCGCCCAACGTCTCCTCCACCGCGCGTGCCATCTGCGACATCCTCACACGCGCCTCCCCTCACGACATCGAAACCGCCCTCTCCTCCTCGGGAATCGTCCCCGAGGATGACCTCATCGAAGAGGTCCTGAAACTCTCCTACAATTACCCTTCCTCCGCCGTCAAGTTCTTCCGGTGGGCCGGGCGCGGCAAAAAGCACCCGGCCCATACCTGGAACTTGATGGTCGACCTGCTGGGAAAAAACCAGCTTTTCGAGCCCATGTGGGACGCCGTCAGGTCCATGAAACAGGAAGAGAAGCTTTCTCTCTCCACCTTCGCTTCCGTCTTCCAGAGCTACTCCACTGCCGGTAGATTTAACGAGGCCGTCATGAGCTTCGACGTCATGGACAGGTACGGCGTCAAACAGGACGTGATCGCCGTTAACTCGCTCCTCAGCGCCATTTGCAGCGAGGACAACCAAACCTCCGTGGGCGTCGAGTTTCTTGAGGGGATCAAGGCGAAGGTGTCGCCTGACGGCGACACCTTTGCCATTCTTCTGGAAGGGTGGCAGAAAGAAGGCAATGCTGCTAAAGCTAAGATCACGTTTGGTGATATGGTGGCTCAAGTTGGGTGGAACAAGGGCAATGTTGCTGCCTACGACGCGTTTTTTATGACCCTCTTTCGCGCTGACCTCATGGATGATGTTGTCAGGTTCCTTCAGGTTATGAAGGACCATGATTGCTTCCCAGGTTTGAAATTCTTTACCAACGCGCTTGACGCTCTTGTCAAGCGAAACGACGCCCATCACGCTGTCCCTATGTGGGATGTGATGGTCAGTGGCGAGTTAGTGCCTAATTTGATAATGTACAATGCCATGATTGGGTTGCTCTGCAACAATGTGGCTATTGATCACGCGATTCGCCTGCTCGATGAGATGGCTTTCCATGGCGCTTTTCCGGACTCCCTCACGTACAACATGATCTTTGAGTGCTTGGTCAAGAACAAGAAGGTGCGTGAGACGGAGAGCTTCTTCTTCGAGATGATCAAGAATGAATGGCCGCCCACCGGCCCTAACTGCGCTGCCGCCATTGAAATGTTGTTTGATTGTGATGACCCTGAAGCAGCACATGAAATTTGGAGTTATGTTGATGAGAATCATGTCAAGCCGCTTGATGAGAGTGCGAATGCCATGCTAATTGGACTTTGTAACTTGAGTAGATTCGCGGAGGTGAAGAGGCTGGCCGAGGATGTGCTTTATAGAAGGATCAAGGTGTATGAATCTACAATGACATTATTGAAGGATGCCTTCTATAAAGAAGGATGGCAGTTTTTGTGGGCTTTTCATGAAAGTTGCGCATGCTTGCTTAGAGCAAAGCTGCAGATTGAGTTTCCTTGTTCCGGGCTCATAGGTGGACATTTATTATCAGTGCTTTAA 1545 0.5146 MNRNMEAVLENPARSRGLKYASINPNKPQPPPIPKPNQFPSHLDAPNVSSTARAICDILTRASPHDIETALSSSGIVPEDDLIEEVLKLSYNYPSSAVKFFRWAGRGKKHPAHTWNLMVDLLGKNQLFEPMWDAVRSMKQEEKLSLSTFASVFQSYSTAGRFNEAVMSFDVMDRYGVKQDVIAVNSLLSAICSEDNQTSVGVEFLEGIKAKVSPDGDTFAILLEGWQKEGNAAKAKITFGDMVAQVGWNKGNVAAYDAFFMTLFRADLMDDVVRFLQVMKDHDCFPGLKFFTNALDALVKRNDAHHAVPMWDVMVSGELVPNLIMYNAMIGLLCNNVAIDHAIRLLDEMAFHGAFPDSLTYNMIFECLVKNKKVRETESFFFEMIKNEWPPTGPNCAAAIEMLFDCDDPEAAHEIWSYVDENHVKPLDESANAMLIGLCNLSRFAEVKRLAEDVLYRRIKVYESTMTLLKDAFYKEGWQFLWAFHESCACLLRAKLQIEFPCSGLIGGHLLSVL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2861 514 MobiDBLite consensus disorder prediction 1 46 - -
Pvu3g2861 514 MobiDBLite consensus disorder prediction 25 39 - -
Pvu3g2861 514 Pfam PPR repeat 148 177 IPR002885 -
Pvu3g2861 514 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Pvu3g2861 514 PANTHER OSJNBA0019D11.15 PROTEIN 29 478 - -
Pvu3g2861 514 Pfam PPR repeat family 321 370 IPR002885 -
Pvu3g2861 514 Gene3D Tetratricopeptide repeat domain 81 196 IPR011990 GO:0005515
Pvu3g2861 514 Gene3D Tetratricopeptide repeat domain 197 335 IPR011990 GO:0005515
Pvu3g2861 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Pvu3g2861 514 Gene3D Tetratricopeptide repeat domain 336 489 IPR011990 GO:0005515
Pvu3g2861 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Pvu3g2861 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Pvu3g2861 514 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 29 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2861 Pvu-Chr3 50331437 50337568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2861 14 477 Glycosyltransferase AT1G05670 20.611 3.73e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2861 - - vra:106768952 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2861 3 50331437 50337568 Pvu3g2861 3 50331437 50337568 ECH