Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2854 ATGCACTCTGCAATGGACTTCACCAGGTTCTCCTCTCCTAAATCTCCACCCATCTTCACGCGACCCCTAACCTGGGTCACCTCCACCGCCCTCCGCCACCAACGCCGCCACCTTCCTCCGCCAACCCCTCCGCCGCCGCCGCCACCTCACCCCACTCCTCCGCAAACCACTAACCACGCCCTTCTCACCCTTCTACCCTCTCTTCTAACCACCGGTGTTCTAGACTCTTCCAAATGTAAATCCATTTTGCCCCATTTGTCCCCTCTCGAATTCGATCGCTTATTCTTCCCCATCCACCACACCGTTAACCCCATTACGACACTCGACTTCTTCCGTCTTGCCACTAACCGTTTTAAGTTCCCCTTCACCTTTCGCTCCTATTGCCTCCTCCTTCGCTCGCTCCTCGCTTCTTCTCTTTTGCCGCGCGCCAGGTCTTTGGTCACTCGTTTGATCGACGGCCACGTTCCCACGTCCTTTCACGACCGCGAGAACCGCCTCCGCGAAATAGCTTCCTCGATGTTGGAGCTGAATCAGGTTTTGGATACACGGCACGGCGAATTGGATTTGTTGCTCTACATTCTCTGCTCTCGGTACAAGGACTTCGGCTTCCGTTGCGCTTTTGATATTTTTATCATGTTTTCGAAGAGGGGCGTTTTCCCGTGTTTGAAAACTTGCAATTTTTTGCTCAGCTCATTGGTGACGGCCAATGAACTTCACAAGAGTTATGAGGTGTTTGATGTCACTTGTCAAGGCGTTGTGCCTGATGTTTTCATGTTCACCGCCGCAATTAACGCGTTTTGTAAGGGAGGGAGGGTTGGGGACGCTGTGGATTTGTTTCACAAGATGGAGAAGCTCGGTGTTTCGCCGAATGTGGTTACTTACAACAATGTGATTGATGGGTTGTCCAAGAGTGGGAGGTTAGAAGAGGCGTTTCGGTTTAAGGATAGGATGGTTAGGAGTGAGGTGAATCCGAGTGTGGTGACCTATGGTGCGCTCATCAATGGTTTGATGAAGATGGAGAAGTTTGAGGAGGCGAATGAAATGTTGGAGGAAATGTATAGCAAGGGTTTTGCTCCCAATGAGGTTGTGTTTAACTCGCTGATTGATGGGTACTGCAGGAAGGGAAATATGATTGAGGCATTGAGGACTAGGGATGAGATGGTATTGAAGGGCATGAAGCCTAATTCTGTTACTTTTAATACTCTTTTACAGGGTTTTTGCAGGAGCAATCAAATGGAGGAGGCTGAGCAGGTATTGGGGTACTTATTGTCTAGTGGGTTGTCTGTTAACATGGATTCGTGTTCGTATGTGATTCATCAGTTGTTGCAAAAATCTAGGTCGGATTCCGCATTAAAAATTGTTAGAGAGTTGGTGTTAAGGAACATCAAGGCTAGTGATAGCTTGCTAACCCTGTTGGTCTGCGGACTTTGTAAATGTGAAAAACATTTGGAGGCGGTTGAGCTTTGGTTTATGCTGGCAGATAAAGGGCTTGCTGCCAATACAGTTACCTCAAATGCGCTACTCCATGGACTTTGTGGACGAGGGAACATGGAGGAAGTTTTCGAAATAATCAAACGAATGCTTGAGAAAGGTTTGGTACTGGATAGGATCTCATACAACACACTTATTTTTGGTTGTTGTAAATGGGGTAAAATCGATGTAGCTTTCAAACTCAAGGAAAAGATGGTTCATGAAGAATTCCAACCAGATACGTATACCTACAATTTCCTAATGAAAGGGTTGGCTGATAAGGGTGAGATGGATGATGTTCATAGGCTTTTGCATGAAGCCGAAGAATATGGCATAGTTCCCAATGTATATACACATGCAATTTTATTAGAAGGATATTGTAAGGCTGATCGGATTGAAGATGCTGTGAAATTGCTTCAGAAATTAGTTTATGAGAAAGTAGAGCTTAGTTCTGTTGTATATAACATACTTATTGCAGCCTACTGTAGAGATGGGAATCTGACGGAAGCCTTCAAACTGTGTGATGCTATGAAAAGTGCGGGCATGCCACCTACCAATGCCACGTATTCTCCTCTAATACATGGAATGTGCTGTATTGGCCGTGTGGATGAAGCAAAGGAAATTTTTGAAAAAATGAGAAATGAAGGCTTGCTTCCAGATATATTTTGTTATACTGCTCTAATTGGTGGTTACTGTAAGTTAGGTCAGATGGACAAAGTGGGGAGTATATTACTGGAAATGTCTTCAAACAGTATACAACTTAATAAAATTACTTACACTATTATGATTGATGCGTATTGTAAATTGGGAAATGTGAAAGAAGCTACAGAACTTTTAAATCAGATGATAAGAAATGGAATAGCTCCAGATACCATCACTTACAATACACTGCAAAAGGGATATTGCAAGGAAAGGGAGTTAGAAGTTACTTTACTGAGTGATCATATGTCTAACACAGGACTGCACGTAGAAGAAGAAATTACTTATAACACATTGGTTCACAGGTTGCATTCACATACAGCAGTTATCGATAAAGAATCCTGA 2514 0.4411 MHSAMDFTRFSSPKSPPIFTRPLTWVTSTALRHQRRHLPPPTPPPPPPPHPTPPQTTNHALLTLLPSLLTTGVLDSSKCKSILPHLSPLEFDRLFFPIHHTVNPITTLDFFRLATNRFKFPFTFRSYCLLLRSLLASSLLPRARSLVTRLIDGHVPTSFHDRENRLREIASSMLELNQVLDTRHGELDLLLYILCSRYKDFGFRCAFDIFIMFSKRGVFPCLKTCNFLLSSLVTANELHKSYEVFDVTCQGVVPDVFMFTAAINAFCKGGRVGDAVDLFHKMEKLGVSPNVVTYNNVIDGLSKSGRLEEAFRFKDRMVRSEVNPSVVTYGALINGLMKMEKFEEANEMLEEMYSKGFAPNEVVFNSLIDGYCRKGNMIEALRTRDEMVLKGMKPNSVTFNTLLQGFCRSNQMEEAEQVLGYLLSSGLSVNMDSCSYVIHQLLQKSRSDSALKIVRELVLRNIKASDSLLTLLVCGLCKCEKHLEAVELWFMLADKGLAANTVTSNALLHGLCGRGNMEEVFEIIKRMLEKGLVLDRISYNTLIFGCCKWGKIDVAFKLKEKMVHEEFQPDTYTYNFLMKGLADKGEMDDVHRLLHEAEEYGIVPNVYTHAILLEGYCKADRIEDAVKLLQKLVYEKVELSSVVYNILIAAYCRDGNLTEAFKLCDAMKSAGMPPTNATYSPLIHGMCCIGRVDEAKEIFEKMRNEGLLPDIFCYTALIGGYCKLGQMDKVGSILLEMSSNSIQLNKITYTIMIDAYCKLGNVKEATELLNQMIRNGIAPDTITYNTLQKGYCKERELEVTLLSDHMSNTGLHVEEEITYNTLVHRLHSHTAVIDKES* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2854 837 Gene3D Tetratricopeptide repeat domain 224 340 IPR011990 GO:0005515
Pvu3g2854 837 Gene3D Tetratricopeptide repeat domain 740 807 IPR011990 GO:0005515
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Pvu3g2854 837 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 19 820 - -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 327 361 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 505 535 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 712 745 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 537 571 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 572 606 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 607 632 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 642 675 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Pvu3g2854 837 TIGRFAM PPR: pentatricopeptide repeat domain 747 781 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Pvu3g2854 837 MobiDBLite consensus disorder prediction 37 55 - -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat 502 532 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat 470 496 IPR002885 -
Pvu3g2854 837 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 19 820 - -
Pvu3g2854 837 Pfam PPR repeat family 640 687 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat family 359 408 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat family 536 582 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat family 748 793 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat family 289 338 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Pvu3g2854 837 Gene3D Tetratricopeptide repeat domain 472 636 IPR011990 GO:0005515
Pvu3g2854 837 Gene3D Tetratricopeptide repeat domain 341 471 IPR011990 GO:0005515
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Pvu3g2854 837 Gene3D Tetratricopeptide repeat domain 637 739 IPR011990 GO:0005515
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Pvu3g2854 837 SUPERFAMILY HCP-like 485 703 - -
Pvu3g2854 837 MobiDBLite consensus disorder prediction 31 58 - -
Pvu3g2854 837 Pfam PPR repeat 601 631 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat 251 283 IPR002885 -
Pvu3g2854 837 Pfam PPR repeat 706 729 IPR002885 -
Pvu3g2854 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2854 107 710 Glycosyltransferase AT1G05670 28.275 7.49e-72 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2854 - - gmx:100819570 1263.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2854 3 50273479 50276226 Pvu3g2854 3 50273479 50276226 ECH