Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2797 ATGGACGTTCGCCGTCGATCCATCTCCGCCTCCGGTGACCGCGTCAAAACCCAGAAGCTGAACAACAACGATAACCTAACCACCACCGTCCTCCCACTCTACCTCACCAACGCCCTCTTCTTCGGTGTTTTCTTCTCTGTCGCTTACTTCCTCCTCCACCGCTGGCGCGACAAGATCCGCACCGCCACTCCCCTCCACGCTGTCACCCCCGCCGAAACAGCCGCCATCTTCTCCCTCGTCGCCTCCGCCATCTACCTCCTCGGCTTCTTCGGCGTCGCCTCCCGCGCCTCCCTCGACGAGCTATCCGACGAGGAAACTGTCCTCCGCGAAGACTCTCGCGCTCCTGGACCCTGCCCCGCCGCGCTCCACGACTCCCCAGTCTCCACGAAAAAACTTAGTCAAAACTCTCTCCCACGCTCCAAATCCGTCGACAAATCGGTTGAGTTATCAAATGCTCCCCCGCTAAAAGCCGCTGGCGAGGCAGCAGCAGTACCAGCACCAGCACCGATCTCCTTGTCTCCCGAGGATGAGGAGGTCGTGGAGGCGGTGGTGTCGGGATCGGTTCCGTCGTACGCGTTGGAGTCGCGCCTAGGCGAGTGCGGTCGAGCAGCTGCGATCCGGCGCGAGGCGGTGCAGAGGCTGACGGGTCGGTCGCTGGAGGGTTTACCCGTGCAGGGGTTCGACTACGAGTCGATATTGGGGCAGTGCTGCGAGATGCCGATAGGGTTCGTGCAGATTCCCGTGGGAGTAGCGGGGCCGTTGTTGTTAGATGGGAAGGAATACACTGTGCCTATGGCCACCACTGAAGGGTGTTTGGTTGCCAGCACGAACAGAGGGTGCAAAGCTATTTTCGTCTCTGGTGGTGCTTCCTCTGTGCTTCTCAGGGATGGCATGACCAGAGCACCCGTTGTGAGGTTGCCCTCTGCTCAGCGCGCTGCGCAGTTGAAGTTCTTCTTGGAGGATCCTCTCAATTATGATTCCCTTGCTGTCGTTTTCAACAAGTCAAGCAGATTTGCCAGGTTGCAGACTATTCAGTGTGCTATTGCGGGCAAGAATCTGTACATGAGATTCCGATGCAGCACTGGTGATGCCATGGGGATGAACATGGTGTCTAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGACAGACTTCCCTGACATGGAAGTTATTGGAATCTCTGGAAATTTCTGTTCGGACAAGAAAGCAGCAGCAGTGAACTGGATTGAAGGACGTGGCAAGTCGGTGGTGTGTGAGGCCGTAATTAAGGAGGAGGTGGTGAATAAGGTGTTGAAGACCACTGTAGAGGCCCTAGTCGAGCTTAACATGCTAAAAAACCTTACTGGCTCAGCCGTGGCTGGTGCTCTTGGTGGATTCAATGCCCATGCTAGCAATATTGTGTCTGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTCAATGATGGGAAGGACCTTCACGTTTCTGTGACCATGCCCTCAATTGAGGTTGGTACTGTTGGAGGGGGCACGCAACTTGCATCTCAGTCTGCATGTCTTAATTTACTTGGTGTGAAGGGTGCGAGTAAGGAATCTCCTGGTGCAAATTCTAGGCTACTGGCCACCATTGTAGCCGGTTCAGTCCTGGCAGGAGAGCTATCACTCATGTCTGCAATTGCAGCTGGACAACTTGTTAAGAGCCATATGAAATACAACAGATCTAGCAGGGATATTTCTAAGATTGTTGCGTGA 1773 0.5443 MDVRRRSISASGDRVKTQKLNNNDNLTTTVLPLYLTNALFFGVFFSVAYFLLHRWRDKIRTATPLHAVTPAETAAIFSLVASAIYLLGFFGVASRASLDELSDEETVLREDSRAPGPCPAALHDSPVSTKKLSQNSLPRSKSVDKSVELSNAPPLKAAGEAAAVPAPAPISLSPEDEEVVEAVVSGSVPSYALESRLGECGRAAAIRREAVQRLTGRSLEGLPVQGFDYESILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIFVSGGASSVLLRDGMTRAPVVRLPSAQRAAQLKFFLEDPLNYDSLAVVFNKSSRFARLQTIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMEVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVNKVLKTTVEALVELNMLKNLTGSAVAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISKIVA* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2797 590 Pfam Hydroxymethylglutaryl-coenzyme A reductase 204 580 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 MobiDBLite consensus disorder prediction 127 147 - -
Pvu3g2797 590 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 511 518 IPR023076 GO:0004420
Pvu3g2797 590 Gene3D - 297 413 IPR009023 -
Pvu3g2797 590 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 173 569 IPR009029 GO:0015936|GO:0016616
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 236 257 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 263 283 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 354 372 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 394 419 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 445 471 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 499 520 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 Gene3D - 247 567 IPR023074 GO:0004420
Pvu3g2797 590 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 589 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 Gene3D - 172 246 IPR023282 GO:0004420
Pvu3g2797 590 CDD HMG-CoA_reductase_classI 185 580 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pvu3g2797 590 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 356 370 IPR023076 GO:0004420
Pvu3g2797 590 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 297 413 IPR009023 -
Pvu3g2797 590 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 176 580 IPR002202 GO:0004420|GO:0015936
Pvu3g2797 590 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 565 578 IPR023076 GO:0004420
Pvu3g2797 590 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 589 - -
Pvu3g2797 590 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 176 580 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pvu3g2797 590 MobiDBLite consensus disorder prediction 108 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2797 Pvu-Chr3 49798762 49802632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2797 31 586 Lipid Metabolism Gene Families AT1G76490 72.093 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2797 K00021 - gmx:100815480 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2797 3 49798762 49802632 Pvu3g2797 3 49798762 49802632 ECH
Pvu2g1228 2 24123993 24128210 Pvu3g2797 3 49798762 49802632 PCT