Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2720 ATGGTGCTCGAGGCCACTATGATCTGTATTGACAATTCGGAATGGATGCGCAATGGAGACTACGCCCCTTCTCGATTTCAGGCCCAAGCAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTTGGAGTTCTCACGATGGCAGGGAAGGGCGTTCGTGTCTTGGTCACCCCTACCAGTGATTTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAATTGGCTCTTAAGCATAGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTTAAACATGAGAAGAAAATGTTGGAGATGATTGGTAGAAAATTGAAAAAGAATAGTGTGGCACTTGACATTGTCAATTTTGGCGAAGAAGATGAAGGAAAGAATGAGAAGTTGGAAGCACTCCTTTCCGCCGTCAACAACAATGATACCAGCCACATCGTCCATGTTCCATCTGGTCCGAATGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCAGCAGGTGGTGTATCTGGATTTGAGTTTGGCGTTGATCCAAACTTGGACCCTGAACTAGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAGGAAGCAGCTGCCAAAAAGGCTGCAGAGGATACTTCCAAACAGGAGAAAGGTGATGAACAGAAGGCTAGTCCACAGGATACAACAATGACCGAGGGTGCAAGTGCAGCAACTTCTGAAGCCAATAATAAGAAAACTGATTTGACGGACGATGAGAATGCTTTACTACAGCAGGCTCTTGCAATGTCAATGGACGATCCTGCAATCAGCCATGATGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGATGATCCTGAATTGGCTCTAGCTCTCCAATTGTCAGTAGAAGATAGCTCAAAGGACTCGACAAGCCAGTCTGACGTCAGTAAATTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCCGGGGTTGACCCAAATGACCCATCGGTCAAAGATTTACTGGCTTCTATGCAAAATCAGTCTGAGCCTCAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAGTAA 1209 0.4582 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKNEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDTSKQEKGDEQKASPQDTTMTEGASAATSEANNKKTDLTDDENALLQQALAMSMDDPAISHDVRDTDMSEAAADDPELALALQLSVEDSSKDSTSQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKK* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2720 402 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Pvu3g2720 402 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Pvu3g2720 402 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 402 - -
Pvu3g2720 402 MobiDBLite consensus disorder prediction 262 281 - -
Pvu3g2720 402 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 402 - -
Pvu3g2720 402 MobiDBLite consensus disorder prediction 237 287 - -
Pvu3g2720 402 Pfam Ubiquitin interaction motif 322 337 IPR003903 -
Pvu3g2720 402 Pfam Ubiquitin interaction motif 289 304 IPR003903 -
Pvu3g2720 402 Pfam Ubiquitin interaction motif 221 234 IPR003903 -
Pvu3g2720 402 Gene3D - 217 303 - -
Pvu3g2720 402 SUPERFAMILY vWA-like 4 175 IPR036465 -
Pvu3g2720 402 SMART uim 219 238 IPR003903 -
Pvu3g2720 402 SMART uim 289 308 IPR003903 -
Pvu3g2720 402 SMART uim 321 340 IPR003903 -
Pvu3g2720 402 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Pvu3g2720 402 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 219 238 IPR003903 -
Pvu3g2720 402 MobiDBLite consensus disorder prediction 362 402 - -
Pvu3g2720 402 MobiDBLite consensus disorder prediction 237 261 - -
Pvu3g2720 402 SMART VWA_4 2 175 IPR002035 -
Pvu3g2720 402 Coils Coil 229 249 - -
Pvu3g2720 402 CDD VWA_26S_proteasome_subunit 1 188 - -
Pvu3g2720 402 MobiDBLite consensus disorder prediction 376 390 - -
Pvu3g2720 402 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 321 340 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2720 Pvu-Chr3 49149642 49153863 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2720 K03029 - gmx:100780583 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2720 3 49149642 49153863 Pvu3g2720 3 49149642 49153863 ECH
Pvu2g1110 2 21755098 21761797 Pvu3g2720 3 49149642 49153863 PCT