Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2700 ATGTTGAACGCAAAAGGAGGTGAAGGTGGAGAAGGGAGAGAAGGGGATTGGGAGTGCAGCAGTTGCAACAACAGGAACTATGCTTTCAGATCATTCTGCAATCGATGCAAGCAACCCCGCCTCCTCGTCGACACCAAAACCCCCGCTGATTCCAAGTGGCTTCCTCGTATTGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAGAAGTGTGGACAACCAAAGGAAGTAGCAGCCATGCCAGCGATTGCGATGACTGGAGCATCTTTCCCCACTTATTCACATTATTATTCCAGGGGCCCAGGAGGACCAGAACAAAAGATGAATATTGGATTGCTTGGCAGTGGAGCACCGCCACTGTCACTACATTTAAACTCCAATTGGCCCATTCTTGGAGCAGATAAGTATGGTGTTCAGCCAATCTCCATATGGCTACCAGGTGGAAATTATGGCTCTGGACATCCTCTTGATAATTCCAACAACCAGAACCTATCTGTTCCAAAGGGATGGCGCAGTGGGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCCTCCCGCTCTCAGTGTAAAAAATGCAATGCTTTTCCACCTGCACTTGGGACAAAACGGCTAGCCTCTGAAGAGTTGGTTTATGACTGGGACAACAAGAGATTGAATACAAATGATCAGCAAACATATACAAGTTTAGATCAAGTGGTTGGGACAGGTGCAGATCCAAAACCTGGAGTCTTCCCCTCTTATGCCAGCATGAACTCAAGTACAGCTCCAAGTTTGCCATTGGCCACACTTCTTCCACCTCAAGTTTCTACACCTGCCCTCCTTGGAAAAGGAGCAAAGCAATGGCGCAGTGGAGACTGGATGTGCTCAAATTGCAATAATCATAATTATGCTTCAAGACTACAGTGTAACAGGTGCAAAACCCAAAGAATGGCCTCCATGCAACCTGTTAATGTTGTGTAA 987 0.4681 MLNAKGGEGGEGREGDWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAIAMTGASFPTYSHYYSRGPGGPEQKMNIGLLGSGAPPLSLHLNSNWPILGADKYGVQPISIWLPGGNYGSGHPLDNSNNQNLSVPKGWRSGDWICNCGFHNYSSRSQCKKCNAFPPALGTKRLASEELVYDWDNKRLNTNDQQTYTSLDQVVGTGADPKPGVFPSYASMNSSTAPSLPLATLLPPQVSTPALLGKGAKQWRSGDWMCSNCNNHNYASRLQCNRCKTQRMASMQPVNVV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2700 328 ProSitePatterns Zinc finger RanBP2-type signature. 17 36 IPR001876 -
Pvu3g2700 328 Pfam Zn-finger in Ran binding protein and others 291 318 IPR001876 -
Pvu3g2700 328 Pfam Zn-finger in Ran binding protein and others 13 40 IPR001876 -
Pvu3g2700 328 Pfam Zn-finger in Ran binding protein and others 56 84 IPR001876 -
Pvu3g2700 328 ProSiteProfiles Zinc finger RanBP2 type profile. 291 320 IPR001876 -
Pvu3g2700 328 SMART zf_4 58 82 IPR001876 -
Pvu3g2700 328 SMART zf_4 181 204 IPR001876 -
Pvu3g2700 328 SMART zf_4 293 317 IPR001876 -
Pvu3g2700 328 SMART zf_4 15 39 IPR001876 -
Pvu3g2700 328 ProSiteProfiles Zinc finger RanBP2 type profile. 56 85 IPR001876 -
Pvu3g2700 328 SUPERFAMILY Ran binding protein zinc finger-like 285 320 IPR036443 -
Pvu3g2700 328 PANTHER OS04G0110600 PROTEIN 176 264 - -
Pvu3g2700 328 PANTHER OS04G0110600 PROTEIN 11 142 - -
Pvu3g2700 328 PANTHER OS04G0110600 PROTEIN 281 327 - -
Pvu3g2700 328 ProSitePatterns Zinc finger RanBP2-type signature. 60 79 IPR001876 -
Pvu3g2700 328 ProSitePatterns Zinc finger RanBP2-type signature. 295 314 IPR001876 -
Pvu3g2700 328 SUPERFAMILY Ran binding protein zinc finger-like 176 204 IPR036443 -
Pvu3g2700 328 Gene3D - 173 207 - -
Pvu3g2700 328 Gene3D - 286 320 - -
Pvu3g2700 328 Gene3D - 10 41 - -
Pvu3g2700 328 Gene3D - 50 85 - -
Pvu3g2700 328 ProSiteProfiles Zinc finger RanBP2 type profile. 13 42 IPR001876 -
Pvu3g2700 328 SUPERFAMILY Ran binding protein zinc finger-like 50 84 IPR036443 -
Pvu3g2700 328 SUPERFAMILY Ran binding protein zinc finger-like 7 41 IPR036443 -
Pvu3g2700 328 PANTHER ZINC FINGER PROTEIN 281 327 - -
Pvu3g2700 328 PANTHER ZINC FINGER PROTEIN 176 264 - -
Pvu3g2700 328 PANTHER ZINC FINGER PROTEIN 11 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2700 Pvu-Chr3 48996324 48999289 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2700 - - gmx:100784874 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2700 3 48996324 48999289 Pvu3g2700 3 48996324 48999289 ECH