Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2607 ATGTTCCTTCTTAGAAAGCAAGGCCAGAATCAGCTGGAGATTGATTCCACAAAACAAGATACAAAGGTGAATGAACTCAGGGCTGCTCTTGGGTCCCTCTCTGGTCGTCGACTACTGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAATTGGAATGTTGATAAAGCAAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAGGCCAGAAGAAATCCGTTGGGCTGAAGTAGCACATGAGGGTGAGACAGGTAAAGTCTCCAGGGCTAACTTTCATGATCGACATGGGAGGACTGTGCTTATTTTGAGGCCAGGAATGCAGAACACAACTTCAGCTGAAGATAATATCAGGCATTTAGTCTATCTATTGGAAAATGCTATCCTAAATCTTTCCGAAGGTCAAGAACAAATGTCGTGGTTGATAGACTACACAGGATTATCACTTAATACGAATATTTCTCTTAAAACAGCTCGCGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATTGCTTTTCTGTACAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCCGTCAAGTTCTTCCTGGACCCCAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCCAATAATAAGGAGAGTGTGGAGCTAATGCAATCACTCTTCGACCTAGATAACCTTCCAAGTGAATTTGGGGGGAAAACAAGTTTAATGTATGATCACGAAGAGTTCTCACGGTTGATGACTGAGGATGATGTGAAAACTGCAAAGTTCTGGGGACTTGACGAGAAGCCTTTCAACCCTCCTAAAAAAGGCCATGCTGGAGCAGAGGTGGCACCAGAACCCGTGTCTGTTCAGACAGTAGTTAGTTAG 891 0.4276 MFLLRKQGQNQLEIDSTKQDTKVNELRAALGSLSGRRLLYCTDACLRRYLEARNWNVDKAKKMLEETLKWRATYRPEEIRWAEVAHEGETGKVSRANFHDRHGRTVLILRPGMQNTTSAEDNIRHLVYLLENAILNLSEGQEQMSWLIDYTGLSLNTNISLKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVKFFLDPKTVQKVKFVYPNNKESVELMQSLFDLDNLPSEFGGKTSLMYDHEEFSRLMTEDDVKTAKFWGLDEKPFNPPKKGHAGAEVAPEPVSVQTVVS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2607 296 CDD SEC14 99 240 IPR001251 -
Pvu3g2607 296 SUPERFAMILY CRAL/TRIO domain 82 257 IPR036865 -
Pvu3g2607 296 Gene3D - 3 270 IPR036865 -
Pvu3g2607 296 PANTHER GH16843P 8 294 - -
Pvu3g2607 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Pvu3g2607 296 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 8 294 - -
Pvu3g2607 296 SMART sec14_4 87 242 IPR001251 -
Pvu3g2607 296 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Pvu3g2607 296 Pfam CRAL/TRIO domain 93 239 IPR001251 -
Pvu3g2607 296 MobiDBLite consensus disorder prediction 274 296 - -
Pvu3g2607 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Pvu3g2607 296 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Pvu3g2607 296 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Pvu3g2607 296 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
Pvu3g2607 296 SUPERFAMILY CRAL/TRIO N-terminal domain 9 82 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2607 Pvu-Chr3 48132624 48136869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2607 46 234 Acyl Lipid Metabolism Gene Families AT5G47730 25.238 9.00e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2607 - - gmx:100782334 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2607 3 48132624 48136869 Pvu3g2607 3 48132624 48136869 ECH