Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2606 ATGTGGCGGTGCGTGGCTCGTGCGAATCACCAATCACTGAGATCTCGCGTGTCAAGATTTTTCTCTAGTGGTGGGAACTCCTCCTACAACGTGGTGGATCACAAGTACGATGCGGTTGTCGTGGGTGCTGGGGGTGCAGGGTTGAGAGCCGCCATTGGACTTTCCGAACATGGCTTCAATACTGCTTGCATCACGAAGCTCTTCCCAACTCGTTCGCATACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAACTTGAAAATTATGGACTGCCATTTTCACGAACTGAAGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCTGATCGAACTGGACATGCTTTACTGCACACTCTCTACGGCCAAGCCATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCACTAGATCTATTAATGAACAGTGATGGTAGTTGCCAAGGTGTGATTGCCTTGAATATGGAGGATGGAACATTACACCGTTTCCAAGCAGCTTCAACAATTTTGGCCACAGGGGGCTATGGTAGAACATATTTTTCTGCCACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCTACAGGCATATATGGAGCAGGCTGCCTTATCACGGAAGGTTCTCGAGGTGAAGGCGGGATTCTTAGGAACAGTGAGGGCGAGAGGTTTATGGAACGTTATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTTGTTTCCAGATCAATGACTATGGAAATCCGGGAAGGCCGTGGTGTAGGACCCCAGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTTCTCAAGGAGAGACTACCCGGTATCTCTGAAACAGCTGCTATTTTTTCTGGCGTGGATGTTACTAAGGAGCCTATTCCTGTTTTGCCAACAGTGCATTATAACATGGGTGGTATTCCCACGAATCATCATGGAGAGGTGATTACTATTAAAGGTGATGATCCAGATGCAGTAGTTCCTGGATTAATGGCTGCGGGGGAAACAGCCTGTGCTTCAGTTCATGGTGCCAATCGGCTTGGTGCAAATTCACTTCTTGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCTGTAGGCCAGGAGATAAACAAAAGCCTTTAGAGAAAGATGCTGGAATGAAATCAATTGCTTGGCTAGACAAATTGAGAAATTCAAATGGGTCATTGCCAACTTCCAAAATTCGGTTGAATATGCAACGAGTAATGCAAAACAATGCTGCTGTGTTCCGTACCCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCATGATGTCAAGTTGAAGGATCGAGGTTTGATATGGAACTCTGACTTGATTGAGACCTTAGAGTTGGAAAATCTTCTGATTAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCTCGAAAAGAGACGATGAAAACTGGATGAAACACACTTTGGGATATTGGGAGAATGAGAAGGTCCGGTTAGATTACAGGCCAGTGCACATGAACACGTTGGACGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTACTGA 1863 0.4546 MWRCVARANHQSLRSRVSRFFSSGGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPQKDHIYLHLNHLPPDVLKERLPGISETAAIFSGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVITIKGDDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEICRPGDKQKPLEKDAGMKSIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKLKDRGLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFSKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2606 620 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 13 620 - -
Pvu3g2606 620 Pfam FAD binding domain 37 433 IPR003953 -
Pvu3g2606 620 Pfam Fumarate reductase flavoprotein C-term 489 620 IPR015939 GO:0016491
Pvu3g2606 620 Gene3D succinate dehydrogenase protein domain 571 620 - -
Pvu3g2606 620 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 71 80 IPR003952 GO:0016491
Pvu3g2606 620 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 378 IPR027477 -
Pvu3g2606 620 Gene3D - 37 444 IPR036188 -
Pvu3g2606 620 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 13 620 IPR030664 -
Pvu3g2606 620 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 37 620 IPR014006 GO:0016627|GO:0022900|GO:0050660
Pvu3g2606 620 Gene3D - 460 570 - -
Pvu3g2606 620 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 34 620 IPR011281 GO:0006099|GO:0016627|GO:0050660
Pvu3g2606 620 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 479 620 IPR037099 GO:0016491
Pvu3g2606 620 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 265 383 IPR027477 -
Pvu3g2606 620 PIRSF SDHA_APRA_LASPO 26 610 - -
Pvu3g2606 620 SUPERFAMILY FAD/NAD(P)-binding domain 30 456 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2606 Pvu-Chr3 48116960 48124566 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2606 K00234 - gmx:100802169 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2606 3 48116960 48124566 Pvu3g2606 3 48116960 48124566 ECH
Pvu2g0306 2 3107054 3113626 Pvu3g2606 3 48116960 48124566 PCT