Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2584 ATGGCTACTGATAGAATTTTCAAGCCTTCCAAGTGGTTCTCCAACAAAACTCTTAAGTTAAGCCTTCATCGCCCAACATCAAGATCCTCCAACTCATCATCACACTCATCAAATGCTTCTCCACGTTCCCCCATGTCAACATGCACAACCCCAAAGAAGAAAGAGGTAAACGGCCTCACGGAAGCTTTTCATCACTTGGATGGTGATGGAGATGGGAAAATCTCTGCCTATGATCTAAGGTCGTATTTTGGGTCCATTGGGGAGCACATGTCTCATGAGGAGGTTGAAGGGGTGATCCATGACCTCGATTCCGATGGGGATAACATGTTGGACTTGCAGGATTTCACCAAGCTGATGAAGAGGGGTGGTGGTGATGGCGATGAGGGGGATCTAAGAAAGGCTTTTGAGATGTTTGTGTGGGAGAAAGAAGGGTGCGGTTGCATCACCCCAAAGGGGTTGCAGAGGATGTTGCACCGTCTTGGAGATGACAGATCCTATGATGAGTGTGTTGCCATGATCGGTGCCTTTGACATTGATCACAATGGTGTCCTTGATTTCGATGAGTTTTACCAAATGATGGCTTAG 585 0.4701 MATDRIFKPSKWFSNKTLKLSLHRPTSRSSNSSSHSSNASPRSPMSTCTTPKKKEVNGLTEAFHHLDGDGDGKISAYDLRSYFGSIGEHMSHEEVEGVIHDLDSDGDNMLDLQDFTKLMKRGGGDGDEGDLRKAFEMFVWEKEGCGCITPKGLQRMLHRLGDDRSYDECVAMIGAFDIDHNGVLDFDEFYQMMA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2584 194 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Pvu3g2584 194 SMART efh_1 94 122 IPR002048 GO:0005509
Pvu3g2584 194 SMART efh_1 58 86 IPR002048 GO:0005509
Pvu3g2584 194 SMART efh_1 168 194 IPR002048 GO:0005509
Pvu3g2584 194 ProSiteProfiles EF-hand calcium-binding domain profile. 164 194 IPR002048 GO:0005509
Pvu3g2584 194 SUPERFAMILY EF-hand 42 193 IPR011992 -
Pvu3g2584 194 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Pvu3g2584 194 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 17 194 - -
Pvu3g2584 194 Gene3D - 123 194 - -
Pvu3g2584 194 Pfam EF-hand domain pair 146 193 IPR002048 GO:0005509
Pvu3g2584 194 Gene3D - 24 122 - -
Pvu3g2584 194 MobiDBLite consensus disorder prediction 20 52 - -
Pvu3g2584 194 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Pvu3g2584 194 CDD EFh 131 194 IPR002048 GO:0005509
Pvu3g2584 194 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Pvu3g2584 194 CDD EFh 59 120 IPR002048 GO:0005509
Pvu3g2584 194 PANTHER CALCIUM BINDING PROTEIN 17 194 - -
Pvu3g2584 194 Pfam EF-hand domain pair 59 120 IPR002048 GO:0005509
Pvu3g2584 194 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2584 Pvu-Chr3 47811418 47812002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2584 1 194 EF-hand Containing Proteins AT3G50770 51.208 2.56e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2584 K13448 - gmx:100306370 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2584 3 47811418 47812002 Pvu3g2584 3 47811418 47812002 ECH