Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2260 ATGCACAAGAGCGCATCAGGTTCCACGTTGGGCCCGGGGGGCCTCGACCTAACCCAGGCCTTCTTCAAGCCCATCAACAACGCCGCCCCTTCCTCTACCCCCAACCCCCACAACAAGATATCCGTCATCGGCGTCGGTAATGTCGGAATGGCCATCGCTCAGACTATCCTCACCCAGGACCTCACCGACGAGCTCGTTCTCATCGACACCAACGCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCCACGCCTCCGTCGACTCTTCCGCCACCGCCGGCTCCAATCTCTGCATCGTCACCGCCGGCGCCCGCCAGATCGCCGGTGAGTCCCGCCTCAACCTGCTCCAGCGGAACCTCTCTATCTTCCGCTCCATCATACCCCCCCTCGTTCGTCACTCCCCCGACACCACTCTCCTCATCGTTTCCAACCCCGTCGACATCCTCACCTACGTCGCCTGGAAGCTTTCCGGTTTCCCCTCCAATCGGGTCATCGGGTCGGGCACCAATTTGGATTCCTCTCGCTTCCGTTTCCTCATTGCAGATCACCTCGACGTCAACGCCCAGGACGTACAGGCGTATATCGTAGGGGAGCATGGAGATAGTTCGGTGGCATTGTGGTCTAGCATTAGCGTTGGTGGTGTTCCAGTGCTGAGTTTTTTGGAGAAACAGCAGATTGTTTATGAGAAAGAGACACTGGAGAATATACACAAGTCAGTGGTAGAGAGTGCGTATGAAGTGATTAGGCTGAAAGGGTACACGTCCTGGGCAATTGGGTACTCAGTGGCTAACTTGGCCCGCTCTATTCTGAGGGACCAAAGAAAGATCCACCCTGTGTCTGTTCTTGCTAAGGGGTTTTATGGGATCGATGGGGAAGTGTTCCTGAGTTTGCCAGCACAGCTTGGTAGAGGAGGGATACTGGGTGTCACCAATGTGCACTTGAACCAAGAGGAGACGCAGAGGCTTGTAGATTCTGCCAAGACCATCCTCCAAGTGCAGACTGAATTGGGTATTTAA 1050 0.5638 MHKSASGSTLGPGGLDLTQAFFKPINNAAPSSTPNPHNKISVIGVGNVGMAIAQTILTQDLTDELVLIDTNADKLRGEMLDLQHAAAFLPRTKIHASVDSSATAGSNLCIVTAGARQIAGESRLNLLQRNLSIFRSIIPPLVRHSPDTTLLIVSNPVDILTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIVYEKETLENIHKSVVESAYEVIRLKGYTSWAIGYSVANLARSILRDQRKIHPVSVLAKGFYGIDGEVFLSLPAQLGRGGILGVTNVHLNQEETQRLVDSAKTILQVQTELGI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2260 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 341 IPR022383 GO:0016616
Pvu3g2260 349 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 PIRSF Lac_mal_DH 34 349 IPR001557 GO:0016616|GO:0019752
Pvu3g2260 349 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Pvu3g2260 349 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Pvu3g2260 349 CDD LDH_1 35 346 - -
Pvu3g2260 349 SUPERFAMILY LDH C-terminal domain-like 178 345 IPR015955 GO:0003824|GO:0016616
Pvu3g2260 349 Gene3D - 180 347 IPR015955 GO:0003824|GO:0016616
Pvu3g2260 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 177 IPR036291 -
Pvu3g2260 349 Gene3D - 20 179 - -
Pvu3g2260 349 Hamap L-lactate dehydrogenase [ldh]. 37 348 IPR011304 GO:0004459|GO:0005737
Pvu3g2260 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 349 - -
Pvu3g2260 349 PANTHER L-LACTATE DEHYDROGENASE 1 349 - -
Pvu3g2260 349 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 42 340 IPR011304 GO:0004459|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2260 Pvu-Chr3 43655325 43657193 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2260 K00016 - gmx:100814897 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2260 3 43655325 43657193 Pvu3g2260 3 43655325 43657193 ECH
Pvu2g0641 2 6861569 6862902 Pvu3g2260 3 43655325 43657193 PCT