Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2245 ATGGAACATCATAAACCCTTGTTACCTACTTCCTCTCACGCCGCTCCAAACCCACGCACTCGCAAGGACCTTCTCCTCCTCCTCTGCGCCTTGCTCTTCCTCTCTTCCCTTGTCGCCTTTGGGCGGAACAGGGCCTCCAACGTCCCTCATGATCACGTCTCATCTTCTGCATCCAACCATCAACAAGAACACCAAAGTCCCACATCGCTGCCTTCTTCCAAATGGCACGCTGTTTCAAGAGGCGTTTCTTCCGGGGTGTCGGAGAAGTCATCCAGCATGTTATTCTCCGGTGAAGGAGGAGCTTCAGAAGCATTTCCTTGGGACAATAGCATGTTGTCTTGGCAGAGAACTTCCTTTCATTTCCAGCCAGAGAAAAACTGGATGAATGATCCTAATGGTCCTATGTACTACAAAGGATGGTATCACTTTTTCTACCAATACAATCCGAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCGGTGTCAAGGGACATGATCCATTGGCTTCACCTTCCATTGGCAATGGTGGCTGATCAATGGTATGACAAACAAGGTGTGTGGACAGGCTCGGCCACCATCTTACCCAATGGTGAAATCATCATGTTATACACAGGTTCCACCAATGAGTCAGTGCAAGTTCAAAACCTTGCATACCCTGCTGACCCCTCTGACCCTCTCCTTGTGGATTGGATCAAACACCCCGGAAACCCAGTTTTGGTCCCACCACCAGGCATTGGTGCTAAGGACTTTCGTGACCCAACAACTGCATGGCTCACCTCTGAAGGAAAGTGGCGCATCACCATAGGGTCCAAGCTCAATAAAACTGGTATTGCTTTGGTTTATGACACTGATGACTTCAAGACCTATGAGCTTAAGAACGGGCACCTTCGAGCTGTCCCTGGCACTGGCATGTGGGAGTGCGTGGACTTCTTCCCTGTGTCCAAGAAAAATGAAAATGGATTGGATACCTCTCTATCTATTAATGGGGCTGAGGTGAAATATGTCATGAAGGTGAGCCTGGATGATGATAGACATGATTACTACACCATAGGGACTTATGATGAGAACAAAGTTTTGTTCACACCAGACGATGTTAAGAATGATGTTGGTGTTGGTTTAAGGTATGACTATGGAATATTCTATGCATCCAAGACATTTTATGATCAAAATATGGATAGGAGAATTCTGTGGGGTTGGATTGGAGAGTCTGACAGTGAATATGCAGATGTGACCAAAGGTTGGGCTTCAGTTCAGAGTATTCCAAGAACTGTGAGGCTTGATAAAAAGACTGGCAGCAACTTACTTCAGTGGCCTGTTGCTGAGGTGGAGAGTTTGAGATTGAGAAGTGATGAATTCAAAAGTTTGAAGGCTAAACCAGGGTCAGTGGTGTCACTAGATATTGAAACAGCCACACAGTTGGATGTTGTTGCGGAGTTTGTGATAGACGCGGAATCCCTACAGAAAACAGCTCAATCCAACGAGGAGTTCACGTGCAGCACCAGTGGTGGAGCTGCACAACGTGGAGCCTTGGGACCTTTTGGTCTTCTGGTTTTGGCAGATGAGGGGCTTTCTGAGTATACTCCTGTGTATTTCTATGTCATTAAAGGAAGAAATGGAAATCTTAAGACTTCCTTTTGCTCCGATCAATCAAGGTCTTCTCAGGCAAATGATGTTCGCAAGCAAATCTTTGGGAACATTGTTCCAGTACTTGAAGGCGAAAAGTTTTCCTTACGGATGCTGGTGGACCATTCTATTGTTGAAAGCTTTGCTCAAGGTGGAAGAACGTGTGTTACATCTCGGGTTTATCCAACAAAGGCAATCTATGGAGCTGCTAGATTGTTCTTGTTCAACAATGCTACTGAGGCCACTGTGACAGCCTCACTCAAAATTTGGCAAATGAATTCTGCATTTATACGCCCATTCCCATTCAACCCAGATCAGAAGAATTAA 1956 0.4606 MEHHKPLLPTSSHAAPNPRTRKDLLLLLCALLFLSSLVAFGRNRASNVPHDHVSSSASNHQQEHQSPTSLPSSKWHAVSRGVSSGVSEKSSSMLFSGEGGASEAFPWDNSMLSWQRTSFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKQGVWTGSATILPNGEIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKHPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTDDFKTYELKNGHLRAVPGTGMWECVDFFPVSKKNENGLDTSLSINGAEVKYVMKVSLDDDRHDYYTIGTYDENKVLFTPDDVKNDVGVGLRYDYGIFYASKTFYDQNMDRRILWGWIGESDSEYADVTKGWASVQSIPRTVRLDKKTGSNLLQWPVAEVESLRLRSDEFKSLKAKPGSVVSLDIETATQLDVVAEFVIDAESLQKTAQSNEEFTCSTSGGAAQRGALGPFGLLVLADEGLSEYTPVYFYVIKGRNGNLKTSFCSDQSRSSQANDVRKQIFGNIVPVLEGEKFSLRMLVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASLKIWQMNSAFIRPFPFNPDQKN* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2245 651 Pfam Glycosyl hydrolases family 32 N-terminal domain 120 440 IPR013148 -
Pvu3g2245 651 Gene3D - 452 635 - -
Pvu3g2245 651 Gene3D Glycosyl hydrolase domain; family 43 124 451 IPR023296 -
Pvu3g2245 651 MobiDBLite consensus disorder prediction 48 76 - -
Pvu3g2245 651 Pfam Beta-fructofuranosidase, N-terminal domain 4 112 IPR021792 GO:0004564
Pvu3g2245 651 SUPERFAMILY Arabinanase/levansucrase/invertase 113 441 IPR023296 -
Pvu3g2245 651 ProSitePatterns Glycosyl hydrolases family 32 active site. 120 133 IPR018053 GO:0004553|GO:0005975
Pvu3g2245 651 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 12 643 - -
Pvu3g2245 651 CDD GH32_Fruct1-like 126 428 - -
Pvu3g2245 651 Pfam Glycosyl hydrolases family 32 C terminal 443 634 IPR013189 -
Pvu3g2245 651 SMART glyco_32 120 595 IPR001362 GO:0004553|GO:0005975
Pvu3g2245 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 440 639 IPR013320 -
Pvu3g2245 651 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 12 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2245 Pvu-Chr3 43438908 43442998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2245 2 643 Glycoside Hydrolase AT1G12240 62.935 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2245 K01193 - gmx:100788844 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2245 3 43438908 43442998 Pvu3g2245 3 43438908 43442998 ECH
Pvu2g0633 2 6667198 6670273 Pvu3g2245 3 43438908 43442998 PCT