Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2203 ATGGACCGCTCCTCCGCCCGCCTCATTGTTCCTCCGCCCGCCGCCTCCGGAGCATCTGCGGAGGCGACTCTCCGCCACGTGGACCGCCTCATAAACTCCAACCACTACACGTCGCCTTCCAGGACAATCTACTCCGACCGCTTCATTCCCAGCAGATCTGCCTCTAAATTCGCGCTCTTCGACATCGCCTCGCTTCCCGATGGCCGCGACGATAGCTCCAGCGCCTACACCACGCTCCTCCGCACCGCCCTCTTCGGCCCCGATGCCGCCGGTCTGGAGCCGCCCCTCACGCCGCAGAAAACGGCCTCGCCGCCCATGACGCTCCCTAGCCGGAATATTTTCCGGTACAAGACCGAGACGCGCCAGTCCATGCACTCGCTCTCGCCGTTCATGTGCGACGATTCCGTACCCGGAGTTAATCACGGCCCGGTCAAGGCTCCCAGGAAGGTTCCGAGGTCGCCGTTTAAGGTTCTGGATGCGCCGGCGCTGCAAGATGATTTTTACCTGAATCTAGTGGATTGGTCTTCGCATAATGTCTTGGCTGTTGGTCTGGGTAACTGTGTTTATCTATGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACCTCGTTTGTTCGGTAGGCTGGGCTCAACGTGGTACACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCATCTCGTTGCAAGAAGATAAGGTCTATGGAGGGTCATCGGTTACGTGTTGGAGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCACAAGAAGATTTTGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTGTGGAATCAACACTCAACTCAGCCTGTCCTGAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGATCGATGCATACGTTTCTGGAATACAACCACCAACTCACACTTAAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCTAAAAATGTCAATGAACTCGTAAGCACACATGGTTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGCTGGCCACTCTTACTGGCCACACATACAGAGTTCTTTATCTTGCCATTTCTCCAGATGGACAGACAATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCATCGCCTAAATCACAGAATACTGACAGTGAAATCGGAGCATCATCTCTTGGAAGAACTACTATTAGGTGA 1422 0.5091 MDRSSARLIVPPPAASGASAEATLRHVDRLINSNHYTSPSRTIYSDRFIPSRSASKFALFDIASLPDGRDDSSSAYTTLLRTALFGPDAAGLEPPLTPQKTASPPMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVNHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTTIR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2203 473 PANTHER PROTEIN FIZZY-RELATED 1 13 473 - -
Pvu3g2203 473 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2203 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 449 - -
Pvu3g2203 473 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Pvu3g2203 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 318 - -
Pvu3g2203 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 244 IPR001680 GO:0005515
Pvu3g2203 473 MobiDBLite consensus disorder prediction 454 473 - -
Pvu3g2203 473 SUPERFAMILY WD40 repeat-like 163 449 IPR036322 GO:0005515
Pvu3g2203 473 SMART WD40_4 195 235 IPR001680 GO:0005515
Pvu3g2203 473 SMART WD40_4 151 192 IPR001680 GO:0005515
Pvu3g2203 473 SMART WD40_4 321 363 IPR001680 GO:0005515
Pvu3g2203 473 SMART WD40_4 409 448 IPR001680 GO:0005515
Pvu3g2203 473 SMART WD40_4 279 318 IPR001680 GO:0005515
Pvu3g2203 473 SMART WD40_4 238 275 IPR001680 GO:0005515
Pvu3g2203 473 Pfam Anaphase-promoting complex subunit 4 WD40 domain 206 259 IPR024977 -
Pvu3g2203 473 Gene3D - 144 453 IPR015943 GO:0005515
Pvu3g2203 473 Pfam WD domain, G-beta repeat 283 318 IPR001680 GO:0005515
Pvu3g2203 473 Pfam WD domain, G-beta repeat 323 363 IPR001680 GO:0005515
Pvu3g2203 473 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
Pvu3g2203 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 449 IPR001680 GO:0005515
Pvu3g2203 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 327 IPR001680 GO:0005515
Pvu3g2203 473 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 13 473 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2203 Pvu-Chr3 42930148 42937649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2203 222 451 Miscellaneous Gene Families AT5G08390 21.459 4.80e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2203 K03364 - gmx:100780928 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2203 3 42930148 42937649 Pvu3g2203 3 42930148 42937649 ECH
Pvu3g2203 3 42930148 42937649 Pvu2g1576 2 29372702 29377436 PCT