Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2157 ATGGAGTTTGGAACCTATGGCTCTTACTATGATGTGCCAGAGGGAGTGGATATTCGGGGAAGATATGATGCAGAGTTTGCAAAAATCCTGACAAAAGATGCTTTGAAATTTGTTGCTGAGCTTCAACGTGAGTTCAGGAACCATATAAAGTATGCATTAGAGAGGAGAAGAGAGGCAAAGAGGAGGTACAATGAAGGGGCTCTTCCGGGGTTTGATCCTGCCACCAGGTACATAAGAGAGCAAGAGTGGGTGTGTGCACCTGTTCCACCAGCTGCTGCTGATAGGAAAGTGGAAATCACTGGTCCAGTGGAAAGAAAGATGATCATCAATGCTCTCAACTCTGGTGCTAAAGTCTTTATGGCTGATTTTGAAGATGCACTGTCACCCAGCTGGGAAAATGTTATGAGAGGGCAAGTGAACTTGAAGGATGCTGTTGATGGGACCATAAGCTTTCATGACAAAGTAAGAAACAGGGTTTACAAGCTCAGTGATGACACAGCAAAGCTTTTTGTGCGACCAAGAGGTTGGCACCTACCCGAGGCACATATATTCATTATGGTGAACCTGCAACCGGTTGCCTTGGAAGCTAAGATATGGAACAGCGTGTTTGAGAAGGCTGAGAATGTAGCAGGCATCGAAAGAGGAAGCATAAGGGCGACGGTTCTGATAGAAACACTTCCTGCAGTGTTTCAGATGAATGAAATTCTGTATGAGCTGAAGGAGCACTCGGTGGGTCTGAACTGTGGGCGATGGGATTACATTTTCAGTTATGTGAAGACCTTCCAAGCTCACCCAGATCGCCTCCTACCAGATAGGGTGCAGGTTGGCATGACTCAGCACTTCATGAAGAGTTACTCTGATCTCCTCATCAGGACCTGCCACAGGCGCGGTGTGCACGCTATGGGAGGAATGGCCGCGCAGATTCCAATCAAAGAGGACCCAGTGGCTAATGAGTTAGCACTGGAACTTGTGAGGAAGGACAAGCTTAGAGAAGTGAATGCAGGGCACGATGGGACTTGGGCTGCACACCCTGCTCTCATTCCAGCTTGCATGGAGGTTTTCAACAACAAAATGGGCAATGCTCCTAACCAGATACATACAAACAAACGTGAAGATGCTGAAAACATAACCGAGCAAGACCTATTGCAGGTACCAAGAGGATCCCGCACCATGGAAGGTCTCAGATTGAACACAAGGGTGGGGATTCAGTACGTGGCAGCATGGCTGAGTGGAAGCGGTTCTGTGCCGCTTTACAACCTGATGGAAGATGCTGCGACTGCTGAGATTAGCCGGGTGCAGAACTGGCAGTGGCTCAAGTATGGTGTGGAAGTGAATGGGGATGAAGTTGGAGTGAAAGTGAACAGAGAAGTTTTTGGTAGGGTGGTTGAAGAAGAGATGGCAAGGATTGAGAAGGAAGTGGGAAGAGAGAAGTTCAGAAAGGGGATGTATAAGGAGGCTTGCAAGATCTTCACACGCCAATGCACCTCCCCAACACTTGATGATTTTCTTACTCTGGATGCCTATAATTACATAGTCCTGCATCACCCCAAGGAATCATCAAAACTTTGA 1569 0.4755 MEFGTYGSYYDVPEGVDIRGRYDAEFAKILTKDALKFVAELQREFRNHIKYALERRREAKRRYNEGALPGFDPATRYIREQEWVCAPVPPAAADRKVEITGPVERKMIINALNSGAKVFMADFEDALSPSWENVMRGQVNLKDAVDGTISFHDKVRNRVYKLSDDTAKLFVRPRGWHLPEAHIFIMVNLQPVALEAKIWNSVFEKAENVAGIERGSIRATVLIETLPAVFQMNEILYELKEHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKEDPVANELALELVRKDKLREVNAGHDGTWAAHPALIPACMEVFNNKMGNAPNQIHTNKREDAENITEQDLLQVPRGSRTMEGLRLNTRVGIQYVAAWLSGSGSVPLYNLMEDAATAEISRVQNWQWLKYGVEVNGDEVGVKVNREVFGRVVEEEMARIEKEVGREKFRKGMYKEACKIFTRQCTSPTLDDFLTLDAYNYIVLHHPKESSKL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2157 522 Pfam Malate synthase 17 185 IPR001465 GO:0004474|GO:0006097
Pvu3g2157 522 Pfam Malate synthase 194 512 IPR001465 GO:0004474|GO:0006097
Pvu3g2157 522 PANTHER MALATE SYNTHASE 10 186 - -
Pvu3g2157 522 PANTHER MALATE SYNTHASE 194 522 - -
Pvu3g2157 522 SUPERFAMILY Malate synthase G 9 513 IPR011076 GO:0003824
Pvu3g2157 522 CDD malate_synt_A 29 512 IPR006252 GO:0004474|GO:0006097
Pvu3g2157 522 PIRSF Malate_synth 184 513 IPR006252 GO:0004474|GO:0006097
Pvu3g2157 522 PIRSF Malate_synth 8 194 IPR006252 GO:0004474|GO:0006097
Pvu3g2157 522 Gene3D Malate synthase, domain III 388 512 IPR044856 -
Pvu3g2157 522 Gene3D Malate synthase, domain 3 193 387 IPR046363 -
Pvu3g2157 522 Gene3D Malate synthase, domain 3 12 192 IPR046363 -
Pvu3g2157 522 PANTHER MALATE SYNTHASE 10 186 IPR006252 GO:0004474|GO:0006097
Pvu3g2157 522 PANTHER MALATE SYNTHASE 194 522 IPR006252 GO:0004474|GO:0006097
Pvu3g2157 522 ProSitePatterns Malate synthase signature. 240 255 IPR019830 GO:0004474|GO:0006097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2157 Pvu-Chr3 42375601 42378265 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2157 K01638 - gmx:732628 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2157 3 42375601 42378265 Pvu3g2157 3 42375601 42378265 ECH