Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2138 ATGGAGTTTTACCATGTTACTCCACATGCAATGCAAAGAATCATGCTGTTGGAAAGTATAACTGATTGCACTTCAAATTTGTTTGAGTTTGTACATGTGGAACTGCACTACTTTCACAAGCGATCGCCATCTCCTTGGTCTCTCTTTTTCACATCTTCCATTTGCATTGATAACATTGAGCAAAGCAATATGGAAATGAAAAATATATTTTGGGGTGTTTTATTGTTTGCTTTTGTTCTTGGAATGGTTGAGAGCTTTGATTTCAACGAGAAGGAGCTAGAATCCGAGGAAGGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCACGAAGCTTCGATGAGAAGCAGAAGCGCTTCAACGTGTTCAGAGCCAATGTGATGAATATCCACAATACGAATAAAATGGATAAGCCTTACAAGCTGAAGTTGAACAGGTTTGCTGACATGACCAACCATGAATTCAGGAGCATCTATGCTAACTCCAAGGTGAGTCACCACAGAATGTTTCGAGGCATGCCACGTGGGAATGGTTCTTTCATGTATGAGAACGTTGACAGGGTTCCTCCTTCGGTGGATTGGAGGAAGAAAGGTGCTGTTACTGATGTAAAGGATCAAGGCAAATGTGGTAGTTGTTGGGCCTTTTCAACTGTTGTAGCTGTTGAAGGTCTTAACCAGATCAAGACACATAAGCTAGTGTCATTGTCTGAGCAAGAACTGGTAGATTGTGACACTAAAGAGAATGAAGGTTGCCAAGGTGGGTTAATGGAAAGTGCATTCGATTTTATCAAACAACATGGCATTACTACAGAAACCAATTACCCTTATGAAGCAAGAGATGGAACTTGTGATGCATCAAAGGTGAAGAAACCTGCAGTGTCAATTGATGGATATGATACTGTCCCCGTGAACAATGAAGCTGCATTGCTCAAAGCTGTTGCCCATCAACCTGTATCAGTAGCCATTGATGCTGGCGGATTTGGCTTCCAGTTCTACTCAGAGGGAGTATTTACGGGTTTGTGTGGCACTGGTCTGAATCATGGTGTAGCAATTGTGGGGTATGGAACAACTCAAGATGGAACCAAATATTGGACAGTGAAGAACTCATGGGGATCTGAATGGGGAGAAAAAGGTTACATTAGAATGCAAAGGAGCGTATTTGACCACAAAGGTCTCTGTGGCATAGCAATGGAGGCTTCCTATCCAATCAAAAAGTCCTCCAAATCAATGGAAGAATCTTCATTTCTTAAGGACGAGCTTTAA 1272 0.4222 MEFYHVTPHAMQRIMLLESITDCTSNLFEFVHVELHYFHKRSPSPWSLFFTSSICIDNIEQSNMEMKNIFWGVLLFAFVLGMVESFDFNEKELESEEGLWDLYERWRSHHTVSRSFDEKQKRFNVFRANVMNIHNTNKMDKPYKLKLNRFADMTNHEFRSIYANSKVSHHRMFRGMPRGNGSFMYENVDRVPPSVDWRKKGAVTDVKDQGKCGSCWAFSTVVAVEGLNQIKTHKLVSLSEQELVDCDTKENEGCQGGLMESAFDFIKQHGITTETNYPYEARDGTCDASKVKKPAVSIDGYDTVPVNNEAALLKAVAHQPVSVAIDAGGFGFQFYSEGVFTGLCGTGLNHGVAIVGYGTTQDGTKYWTVKNSWGSEWGEKGYIRMQRSVFDHKGLCGIAMEASYPIKKSSKSMEESSFLKDEL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2138 423 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 83 412 - -
Pvu3g2138 423 CDD Peptidase_C1A 192 405 IPR039417 -
Pvu3g2138 423 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 83 412 - -
Pvu3g2138 423 Pfam Cathepsin propeptide inhibitor domain (I29) 103 158 IPR013201 -
Pvu3g2138 423 SUPERFAMILY Cysteine proteinases 100 406 IPR038765 -
Pvu3g2138 423 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 366 385 IPR025661 -
Pvu3g2138 423 Pfam Papain family cysteine protease 191 406 IPR000668 GO:0006508|GO:0008234
Pvu3g2138 423 SMART Inhibitor_I29_2 103 158 IPR013201 -
Pvu3g2138 423 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 209 220 IPR000169 -
Pvu3g2138 423 PRINTS Papain cysteine protease (C1) family signature 209 224 IPR000668 GO:0006508|GO:0008234
Pvu3g2138 423 PRINTS Papain cysteine protease (C1) family signature 350 360 IPR000668 GO:0006508|GO:0008234
Pvu3g2138 423 PRINTS Papain cysteine protease (C1) family signature 366 372 IPR000668 GO:0006508|GO:0008234
Pvu3g2138 423 Gene3D Cysteine proteinases 78 408 - -
Pvu3g2138 423 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 348 358 IPR025660 -
Pvu3g2138 423 SMART pept_c1 191 406 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2138 Pvu-Chr3 42146222 42148606 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2138 K16292 - gmx:100806581 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2138 3 42146222 42148606 Pvu3g2138 3 42146222 42148606 ECH
Pvu3g2138 3 42146222 42148606 Pvu9g1764 9 24946375 24948267 PCT