Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2136 ACTCCTCTTCATAAACTTCACCCTCCACCTTTCACTTCCAAAATGAACCATTCTGCAACGCTCCAACAACGGTGCGTGGCTTCCCTCAAAACCCTAACACCCCACATTACCTGTCTCGCGGTCCACCGGAACCTCCTCTACGCCGCATCCCTAAACCTCATCAACGTCTTCGACCTCTTCCATTACTCCCACATCGACGCCTTCAACCAAAGGCCTGCCTCAGGCTTTGTCAAGTCCATCGCCTTCACCAACTCAAGGGTCTTCACCGCTCACCAGGACCGCAAGATTCGCGTCTGGCTCATCACTCCCTCCAAACGACATCGTCTCCTCTCCTCCCTCCCCACCGTCACCGACTGTCTCCGCCGCTGCATCGTTCCCCGAAACTACGTCAGCGTGCGTCGCCACAAGTCTAGGCTCTGGATCCAGCATTGCGACACCGTATCTGGTTTAGCCGTCAACCAGAGCCTCATGTATTCGGTTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTGTTCAGTTTCCGGTGTTTGGAGACCGTTAAAGCGCATGAGGATGCCATCAATGCTGTGGTTGTTAACGGTGATGGCACCGTATACACTGCGTCCGCGGATGGTAGCATCAAGGTTTGGAGAAGGGACTGCAAGGCGAAACGGCACGCGTTGGTGAGCACCATTGCGAGGCAAAAGTCGGCGGTGAATGCGCTTGCTTTGGACGGTGATGGCGCGGGGTTGTTTTCCGGCAGTTGCGACGGCGCGATATTCCGATGGGATTGGGGGTGTGAGGAAAACGGCGCGGTGAAGATGGAGACGTTGAGGGGTCACAGTGGGGCCATACTGTGTCTGATCCACGTGGCGGGTTTGTTGGTGAGTGCGTCCGCGGATCTAACGGTTAGGATCTGGAAACGAGAGAGAAGGAGGAGTGGGTATAGTTGCAGCGCGGTGTTAGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTAGCCGTTCCGGGAGATGACGATGACTCAAACGGCGTCTTTAGGCTATTCAGTGGAAGCCTAGACGGGGAAATTAAGGTGTGGGAGGTGTTTAGTTCAGTTTGA 1080 0.55 TPLHKLHPPPFTSKMNHSATLQQRCVASLKTLTPHITCLAVHRNLLYAASLNLINVFDLFHYSHIDAFNQRPASGFVKSIAFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDCLRRCIVPRNYVSVRRHKSRLWIQHCDTVSGLAVNQSLMYSVSWDKSFKVWDLFSFRCLETVKAHEDAINAVVVNGDGTVYTASADGSIKVWRRDCKAKRHALVSTIARQKSAVNALALDGDGAGLFSGSCDGAIFRWDWGCEENGAVKMETLRGHSGAILCLIHVAGLLVSASADLTVRIWKRERRRSGYSCSAVLEGHEKPVKSLVAVPGDDDDSNGVFRLFSGSLDGEIKVWEVFSSV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 359 IPR001680 GO:0005515
Pvu3g2136 359 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 356 IPR045182 -
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 257 IPR001680 GO:0005515
Pvu3g2136 359 Gene3D - 119 358 IPR015943 GO:0005515
Pvu3g2136 359 Gene3D - 16 118 IPR015943 GO:0005515
Pvu3g2136 359 SMART WD40_4 22 58 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 63 100 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 308 354 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 173 211 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 264 301 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 218 257 IPR001680 GO:0005515
Pvu3g2136 359 SMART WD40_4 134 170 IPR001680 GO:0005515
Pvu3g2136 359 SUPERFAMILY WD40 repeat-like 24 356 IPR036322 GO:0005515
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 210 - -
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 359 - -
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 210 IPR001680 GO:0005515
Pvu3g2136 359 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Pvu3g2136 359 Pfam WD domain, G-beta repeat 310 353 IPR001680 GO:0005515
Pvu3g2136 359 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Pvu3g2136 359 Pfam WD domain, G-beta repeat 269 301 IPR001680 GO:0005515
Pvu3g2136 359 PRINTS G protein beta WD-40 repeat signature 157 171 IPR020472 -
Pvu3g2136 359 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Pvu3g2136 359 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Pvu3g2136 359 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 19 356 - -
Pvu3g2136 359 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2136 Pvu-Chr3 42129498 42130756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2136 172 354 Acyl Lipid Metabolism Gene Families AT3G18860 26.984 1.98e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2136 - - aprc:113874855 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2136 3 42129498 42130756 Pvu3g2136 3 42129498 42130756 ECH