Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2120 ATGAACCGTTTGAAGGCAATTGTTGCTAACCTCAGATCCGTCGACTCGCCACTCGCCAGGGGACTCATTGCAACTCGGTCTATCCAACTCACTCAGAATCAGGTGACTCATTTCTCTCTTTACACTCCATCTCCCCTTTTGGATCATTCTCACAATTTTCCCTTTCCCAACATTCATCGGAAGCTCTACTTTTCTTCGAAACCAAATCCCATTCCCGAGCTTATTTTTACCAGCCATTGGTCCAAGGGGTTAGAGCATGAGCTAGAAAAATGCTACCCATCCCTGACCCATGAAACTGTTGTTTACATTTTGAAGCGGTTGGAAGCAAACCCAGAAAAAGCATGGTGCTTTTTCGATTGGGTCAGTACGAAAAAATGGTTTAGAGCAAGTTCTACACTATATGGTTTAATTCTTAGGGTCTTGGCCACTGAGGAGACGATAAAACAGTTTTGGATTACTCTATGGACTATGAAGAGAAAGGGGTTTTATTTTTACGAAGAAATGTATTTTCCAATTTTAGCCGGTTTTAAAAGGAAAAAGATGGACAAGGATCGGTCGTCTCTTATCCACTTCTATAATCGAAGTATCCGGGAAGATGCAATGCAAAGTGTTGTTGCCAATGTGGTTGACATCATTTCAGTGTCTAAATGGGGTGATGGTGTTAAGGGTGAACTTGCAAAGGTTAATATTCAGCTCTCGGATAATTTTATAATAAGGGTTTTGAGAGAGCTTCGAAACACTCCTTTAAAGGCTTACGAGTTCTTTCGTTGGGTTGGGAGACAATCTGGTTATGAGCATAATACAATAACTTATAATGCATTTGCAAGAGTTCTGGCGAGGACAGATTCAATTGAGAAGTTTTGGAGTGTCATCGAGGAGATGAAGAGTGTGGATCATGAATTGGATATTGATACTTACCTAAAGATATCAAGAATACTTCAAAGGAATAGGATGATGGAAGATGCTGTCAAGCTTTATGAGCTTATGATGGATAGTTCATATAAGCCTTCAGTTGAGGATTGCTGCTTTCTTTTGAATAGTATCTCTGAAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGGGTTTCTAAGAAATACGAGTCAACAGGGCACACTCTCTCCAAGGCAATCTATGATGGGATCCACAGGTCTTTGGCAAGTTCTGGGAAACTTGACGAAGCTGAGGATATTGTTAATCGTATGAGAAATGCTGGTCATGAACCTGATAACATCACATATGGTCAAGTGATTGTTGGATTTTGTAAGATGAGGAGGCTTGAAGAAGCATGTAAAGTACTGGAGGACATGGAATCTTGTGGTTGCATCCCTGATACCAAGACTTGGACCCTGTTGGTCCAAGGGTATTGTGTTGCGAGTGAAGTTGACAAGGCATTACTATGTTTACATAAGATGATTGAAAAGGGATGCAATCTGGATGCTACTGTTTTAAGTGTTCTAACAGACAGTTTTCTTGGTCAGAAGCGAATAGATGATGCATACAAGTTGCTTGTAAAGGTTGTTACTAAACACGGTGCATCTCCGTCTCACGGTACATATAAGAAACTGATTGTAAATCTATTGGAAATTGAGAAATTTGAGGAGGCTCTTAACCTTCTTTGTTTGACTAGGAAACACAAATGCACACCAATTCTTGAACCCTTTGTGCAGTATATTTCTAATTTTGGGTCTGTTGAAGATGCTGTGAAATTCCTGAAGAGTAAGGGAAGTTCCCGGTCGTATTTGATCTACCTTCGTGTTTTTAAATCTTTACTTGGAAAAGGTAGACTCTCAGACGCTGAAGATCTGTTGAGCAAGATACCCTCCTATATAAGTAAACGCAAAGAAATCCTTGAATTCTTCAATTCAATGGAGAATTGCACGGTGCACAGCCTCGGCAATAGCAGTCAGTAA 1911 0.4008 MNRLKAIVANLRSVDSPLARGLIATRSIQLTQNQVTHFSLYTPSPLLDHSHNFPFPNIHRKLYFSSKPNPIPELIFTSHWSKGLEHELEKCYPSLTHETVVYILKRLEANPEKAWCFFDWVSTKKWFRASSTLYGLILRVLATEETIKQFWITLWTMKRKGFYFYEEMYFPILAGFKRKKMDKDRSSLIHFYNRSIREDAMQSVVANVVDIISVSKWGDGVKGELAKVNIQLSDNFIIRVLRELRNTPLKAYEFFRWVGRQSGYEHNTITYNAFARVLARTDSIEKFWSVIEEMKSVDHELDIDTYLKISRILQRNRMMEDAVKLYELMMDSSYKPSVEDCCFLLNSISESDKPNLDLVFRVSKKYESTGHTLSKAIYDGIHRSLASSGKLDEAEDIVNRMRNAGHEPDNITYGQVIVGFCKMRRLEEACKVLEDMESCGCIPDTKTWTLLVQGYCVASEVDKALLCLHKMIEKGCNLDATVLSVLTDSFLGQKRIDDAYKLLVKVVTKHGASPSHGTYKKLIVNLLEIEKFEEALNLLCLTRKHKCTPILEPFVQYISNFGSVEDAVKFLKSKGSSRSYLIYLRVFKSLLGKGRLSDAEDLLSKIPSYISKRKEILEFFNSMENCTVHSLGNSSQ* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2120 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Pvu3g2120 636 Gene3D Tetratricopeptide repeat domain 226 356 IPR011990 GO:0005515
Pvu3g2120 636 Pfam PPR repeat 269 296 IPR002885 -
Pvu3g2120 636 TIGRFAM PPR: pentatricopeptide repeat domain 383 409 IPR002885 -
Pvu3g2120 636 TIGRFAM PPR: pentatricopeptide repeat domain 447 479 IPR002885 -
Pvu3g2120 636 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Pvu3g2120 636 TIGRFAM PPR: pentatricopeptide repeat domain 315 337 IPR002885 -
Pvu3g2120 636 TIGRFAM PPR: pentatricopeptide repeat domain 411 445 IPR002885 -
Pvu3g2120 636 Pfam Pentacotripeptide-repeat region of PRORP 319 491 IPR033443 -
Pvu3g2120 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Pvu3g2120 636 PANTHER OS01G0970900 PROTEIN 1 623 - -
Pvu3g2120 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Pvu3g2120 636 PANTHER OS01G0970900 PROTEIN 1 623 IPR044578 GO:0008380
Pvu3g2120 636 Gene3D Tetratricopeptide repeat domain 357 510 IPR011990 GO:0005515
Pvu3g2120 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2120 Pvu-Chr3 41993873 41996819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2120 250 621 Glycosyltransferase AT1G05670 25.789 2.36e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2120 - - gmx:100801257 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2120 3 41993873 41996819 Pvu3g2120 3 41993873 41996819 ECH