Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2116 ATGGAGTCTGCTCTAGTGATCAAGGTGAAATATGGGGATACCCTCAGGCGCTTCACTGCCCGTGTGGACGAGATTAATCGACTGGATCTCGACATGGTTGGGTTGAGACAGAAGATATGTTCTATCTTCGGTTTCGGTGCTGATGCAAATTTAATTCTGAGATATGTTGATGAAGATGGTGACTTGGTGACTCTAGTTGATGATGATGATTTGCGTGATGTGATGAGGCAACAATTGAAATTCTTGAGAATTGAGGTACTTATGAACAATGACGACGGTGCTAAATCAAATGCTTGGTCTAGTGGAAGTGCCACCCCCTCAAAGTCTCCTGTCACAAACCCACCTCTGGGTAGAAATCCTATATTACATGCGGCTCTTTCTAAATTGTCGCTTTCAAAAGCAGCATCTTCAACACCTGTGGTTGATAATCTTGCCAATTCAATTTTGAAAATGGGACAAACTGTTCTAAATTCTCATTTCCAGCCTCGTGATGCAGCTGGTAGAAGTTCAAAAACTGGTATTCCTGAAGATCGTGTCACTTCTAAAGCAAAAGGTTCTCGATCTTCATATGTGGACTCAGCCTCCAATTCTGCTGTCCATAGTGAGAGTGCCTCTCCCTTAAGATCTCCTGTTCCAAACCCATCTTTGAGCGGAAATGCAGATAAAGTTGACATTTTATCTTCTTTGCACGAGCCAGTACATGAGCTTATTTCCAATTTATTGTATCCAAATGCTGCATCTTCTAGTCAGCTTCCCGTTAATCTTGCTGATTTAATTTCCCTAGTGGGACATTCTGTTCTAAATTCTTATTGCCAGCCTCATGTTGCAACTGGTCCATTCTCTAAAAATGGTGTTCCTGAAGAACCTATCACCGGTGAAGCAAGAGGTCTACAAATGCCATCTGTAGACTTGGCTTCCAATGCCACTCAACAGGTGGAGACTGAAAACCTAATTAGAGATGCAGCCTCTTCTTCCAATGCCAATCCACATTGTGAAGCAAGAGGTGTACAGATGCCATCTGTAGACTTGGCTTCCAATGCCACTCAACAGGTGGAGGCTGAAAACCTAATTAGAGATGTAGCCTCTGCTTCCAGTGCCAGTCAACATTTGGAAGCTGGGAATGTAATCAGTGCAACAACAGCTGCAGAATTTCCCACTGTTGATCTCAATGTCCCTCCTTGTGATCCCTATTCATCTCAGTCCACAAATGTGAATAAGGATTCACTTTCATCAGAAGTCCCTGACGATGGTGGCAGGAAGGGTAAAATGTCGAATGTCTATACTTCCGCTGGTAGGGTTGACAGCAGTGGCACATCCTCAATTCTTGCTGGTCCTAATAATGGTTCAACCGAGACAGCTTCATTAAGTGCTGGTGCTGGTGCTGTCTTTGACTGTTCGTTTTCTGGGACATATATCAATTCTTGGACACCACATGTTGGAAACTCTCAAATGCCCCCGTTTAAAAGGAGCCATCGTCACACTGAGGCAATGACTGGTATGTTCCACAAAGGTGTGCGCTGTGATGGTTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAAGGAAAATTATGATCTCTGCCACATTTGTTACAACGAAATGGGTAATGGGACAGACTATATCAGAATGGACCGCCCCGCATCTGCTCGTTTCCCTCGATGTGTATATGAACAATCCAAAAACTTTCCAACATTACCACCACATACTTTTAAGAAAAGTTCCATTTTGAAGCATGCAAGACCAAAGTTAGATAGTCGGTTCATTTTGGATGTCAATGTGATAGACGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGAATGCGCAATAATGGCACTGTAGTATGGCCCAAGGGAACTGAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGACTTGGAGGTTCAGAATGGTGTCCCTACGGAGAAGGAACTGGACATTGCAGTTGACTTTACAGCACCTCAGATACCTGGTCGATACATATCATACTGGAGGTTGGCAACATTATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGATTGAACTTGAATATTCCCCTTGATGTCAGTGGCTCTGAAGGACCTCTGCTTATAGATATCAATGTTCGGCCTACCGAGGATGATACTTTTCTTCAAACCCGCATTCCTAATGCTCCGATTGAACCTGCAACACAGGTTGACAAGGAACCAAAGTTGGAACTGGAAAAGGAGTTCCCTATAAATGAAGCTACATTTGTTGGCCCTGCCGCCTCAGCCCCTGCTGCAACCTCCGTGGCACCTTCATCGGTTTCTTATCCTATTATTGATTTATCTGAAACAACCGAAGCTGTTCCCTCTAATCAGCAGTCATCCACTGTAGATTTGCCATCATCATCTGTTGTAGGGACTGGTGGAATTAACTCTGTGGAGGAGAGCCTACTTAGAGAACTTGAGGAGATGGGTTTCAAGCAGGTTGATTTGAACAAAGAGATCTTGAGGATTAATGAGTACGATCTGGATCAATCCATAGACGATCTATGTAGTGTTGATGTCTATGGTATTTCTGAGTGGGGCCCTATCCTTCTAGAGTTACAAGAGATGGGTTTCCTTGACAAAGAGATGAATAAGAAGTTGCTTAGGAAAAACAATGGAAGCATAAAGCGTGTTGTTATGGATTTAATCCAAGGAGAGTAG 2763 0.4329 MESALVIKVKYGDTLRRFTARVDEINRLDLDMVGLRQKICSIFGFGADANLILRYVDEDGDLVTLVDDDDLRDVMRQQLKFLRIEVLMNNDDGAKSNAWSSGSATPSKSPVTNPPLGRNPILHAALSKLSLSKAASSTPVVDNLANSILKMGQTVLNSHFQPRDAAGRSSKTGIPEDRVTSKAKGSRSSYVDSASNSAVHSESASPLRSPVPNPSLSGNADKVDILSSLHEPVHELISNLLYPNAASSSQLPVNLADLISLVGHSVLNSYCQPHVATGPFSKNGVPEEPITGEARGLQMPSVDLASNATQQVETENLIRDAASSSNANPHCEARGVQMPSVDLASNATQQVEAENLIRDVASASSASQHLEAGNVISATTAAEFPTVDLNVPPCDPYSSQSTNVNKDSLSSEVPDDGGRKGKMSNVYTSAGRVDSSGTSSILAGPNNGSTETASLSAGAGAVFDCSFSGTYINSWTPHVGNSQMPPFKRSHRHTEAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCHICYNEMGNGTDYIRMDRPASARFPRCVYEQSKNFPTLPPHTFKKSSILKHARPKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTVVWPKGTELVWIGGDKFSDSHSVDLEVQNGVPTEKELDIAVDFTAPQIPGRYISYWRLATLSGHKFGQRVWVLIQVDASLKDSFYDNSQGLNLNIPLDVSGSEGPLLIDINVRPTEDDTFLQTRIPNAPIEPATQVDKEPKLELEKEFPINEATFVGPAASAPAATSVAPSSVSYPIIDLSETTEAVPSNQQSSTVDLPSSSVVGTGGINSVEESLLRELEEMGFKQVDLNKEILRINEYDLDQSIDDLCSVDVYGISEWGPILLELQEMGFLDKEMNKKLLRKNNGSIKRVVMDLIQGE* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2116 920 Gene3D - 1 88 - -
Pvu3g2116 920 PANTHER PROTEIN JOKA2 1 153 - -
Pvu3g2116 920 PANTHER PROTEIN JOKA2 441 920 - -
Pvu3g2116 920 SUPERFAMILY UBA-like 880 918 IPR009060 GO:0005515
Pvu3g2116 920 Pfam Ig-like domain from next to BRCA1 gene 596 696 IPR032350 -
Pvu3g2116 920 MobiDBLite consensus disorder prediction 159 219 - -
Pvu3g2116 920 Gene3D - 877 920 - -
Pvu3g2116 920 MobiDBLite consensus disorder prediction 95 114 - -
Pvu3g2116 920 Gene3D - 825 873 - -
Pvu3g2116 920 SMART PB1_new 4 89 IPR000270 GO:0005515
Pvu3g2116 920 SUPERFAMILY CAD & PB1 domains 4 80 - -
Pvu3g2116 920 MobiDBLite consensus disorder prediction 95 119 - -
Pvu3g2116 920 Pfam Zinc finger, ZZ type 502 537 IPR000433 GO:0008270
Pvu3g2116 920 Gene3D - 494 555 IPR043145 -
Pvu3g2116 920 MobiDBLite consensus disorder prediction 393 410 - -
Pvu3g2116 920 SMART zz_5 501 546 IPR000433 GO:0008270
Pvu3g2116 920 MobiDBLite consensus disorder prediction 184 219 - -
Pvu3g2116 920 MobiDBLite consensus disorder prediction 392 422 - -
Pvu3g2116 920 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Pvu3g2116 920 SUPERFAMILY RING/U-box 496 552 - -
Pvu3g2116 920 CDD NBR1_like 585 697 IPR032350 -
Pvu3g2116 920 ProSiteProfiles Zinc finger ZZ-type profile. 502 552 IPR000433 GO:0008270
Pvu3g2116 920 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 441 920 - -
Pvu3g2116 920 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 153 - -
Pvu3g2116 920 CDD UBA_NBR1 879 917 - -
Pvu3g2116 920 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Pvu3g2116 920 Gene3D Immunoglobulins 582 700 IPR013783 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2116 K17987 - gmx:100778692 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2116 3 41978284 41982882 Pvu3g2116 3 41978284 41982882 ECH