Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2094 ATGGCATCAACAGGGAGGGATCACAGGAGTGTCCGCAGAAGGGCAAGCTTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGAGGATGGTATAGGCTTTATAGGAAGAGGAAGAAGAAGAAATCAACATCCTAATTTTCCTTTGCAGGCTCAAGAAAATGTTTCACAATCACATGATCAAGTAGTGGTTCAAGAGGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATATGGCACCAAACACCCTTTCTTTTATGCTTGCCGTCTCGGGGAAACCATTAAGTTAGCAGAACAAGACCACAAGTTCTTGTTCATGTACCTCCACTCACCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACGCTGTGTTCGGAGCCAGTGATTCAGTTTCTTGACGTGAATTTTGTTTGCTGGGGAGGACTTGCATACAGAGGCGAGGGCTTGCAAATGGTTGCAACGCTAAGCCCTGACACCTTTCCCTGTTGTGCTGTCATAGCCCCTACTCCTGGTGAAAGCATAGCAGTTCTGCAACAGCTAGAAGGACCCCTTTCACCTGCTGAGCTAGTGGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAAGTGCTAAAGCTAAGCAGGAAGAAAAGATTCGAGCAGACCGTAGGCTTAGAGAAGAACAGGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGAAAAACTCAATAATTTACCTTCAAGAGAGGGAGGTCAGAAACAAGTGGAAGCTCACAGCACCAAAAATTATGGGAAAGTGATGAACAGTTCTATGAATGTCACTAAACAGAACAGCAGAGTGAATGAGTCCACTAAGGGAGTTGCAAGTAAAGGAATGGAGTCTCAACCCACGCAGATACTCATAAGGTTTCCAAACGGGGAGAGGAGAGAGCACACTTTCCTTTGCACAGACAAAATCCAATCCATTTTCTCATACATCGATTCATTAGGATTGCCAGGGATTGGAAACTACAGATTGATATCAAACTTCCCAAGAAGAGCTTTCGGTGTTGACCAAATGAGAATGACTCTCAAAGAGGCTTCCTTGTATCCTAAAGCTAGTGTGTTCCTAGAGCCTCTTGGAGCTAGAGTCCCATAA 1143 0.4453 MASTGRDHRSVRRRASFPRSIMEGISRAMEDGIGFIGRGRRRNQHPNFPLQAQENVSQSHDQVVVQEEWSFLESFEQQYGTKHPFFYACRLGETIKLAEQDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLAYRGEGLQMVATLSPDTFPCCAVIAPTPGESIAVLQQLEGPLSPAELVGILQRTLEEQGVAFGSAKAKQEEKIRADRRLREEQDAAYLAALQIDKEKEKLNNLPSREGGQKQVEAHSTKNYGKVMNSSMNVTKQNSRVNESTKGVASKGMESQPTQILIRFPNGERREHTFLCTDKIQSIFSYIDSLGLPGIGNYRLISNFPRRAFGVDQMRMTLKEASLYPKASVFLEPLGARVP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2094 380 PANTHER FAS-ASSOCIATED PROTEIN 10 374 - -
Pvu3g2094 380 Pfam UBX domain 296 373 IPR001012 GO:0005515
Pvu3g2094 380 SUPERFAMILY Thioredoxin-like 66 204 IPR036249 -
Pvu3g2094 380 CDD UBX 301 373 - -
Pvu3g2094 380 SMART ubx_3 291 374 IPR001012 GO:0005515
Pvu3g2094 380 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 10 374 - -
Pvu3g2094 380 Gene3D - 294 374 - -
Pvu3g2094 380 ProSiteProfiles UBX domain profile. 294 372 IPR001012 GO:0005515
Pvu3g2094 380 SMART 45neu3 70 196 IPR006577 -
Pvu3g2094 380 Coils Coil 209 229 - -
Pvu3g2094 380 CDD UAS 91 201 - -
Pvu3g2094 380 Gene3D Glutaredoxin 55 204 - -
Pvu3g2094 380 SUPERFAMILY Ubiquitin-like 293 375 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2094 Pvu-Chr3 41637210 41639384 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2094 K18726 - gmx:100775212 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2094 3 41637210 41639384 Pvu3g2094 3 41637210 41639384 ECH