Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2050 ATGGGGACGACAACAAAACCTCTTTCGCACACAGTTAGCGTCTTCAACATACCTCGCTCCGCCACCGCCAAGGACCTCCTCCACTTCATCGAATCCAAGGTGGGTTCTTCCACAGTCTTTGCCCTCGAAATCTTCTCCGACAACGTCAACTGGAAGTCCCGCGGCGCTGGCCGCGTCCAGTTTGAGGCCCTCGACGCCAAGTCCCGCGCCCTCTCTCTCTCCCAACTCCAACAACTGCTCATCCACTCCCATTTCCTCCGCCTCTCTGATACCTCCGAAGACATCATTTTCCGCCCCCTCCACCGCCTTCAAAACGGAGTTCTCTACGCCGGCCTCATGCTCTCCGACGACCGGATGAGCGTCCTCGAGTCCTGGGAGGGCGTTGCGGGCTTGGTCGTGCCCCAAAGGAGGAAGCTTGACTTCTTGGTGTTGCATGATGGCGACTGTTACCGAGTCGAGATTTTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGCAGAAGGCAAACTCAATGCCCTCCTCTTGAAGCTTAAATTTGGGCCAAAAATTTATAAGAAAAAGATGGGGCCAGATGTGGCAACCAAGTTTAGGAATGATAGATACCATTTTTGTAAGGAAGATTCCGAGTTTCTTTGGGTGCGGACTACTGACTTTTCGGCTCTGAAGTCGATTGGGCACTCTACTTCATTTTGTTGGGAAATTGCGGAAGAACAATTGGCTTCGGATGTTTTTACAAGTTTGCCGCTCTACAAGGAAAATTTAAGAGATTTGGTTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACAGAAGCAGTTCCTCTTGTAAAGTGTGCGTCGCAATCCAAGTTACCTTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTGGGAGGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAGATGGGCTTCACTTGTTATGATCCTCTTAAATTTGTGAAGACTCAGTTGCATGTGCTGAGTAACAAGAAAAGAAGTCAACCACTATCTTCACAGAAAAGGTTGATAGATAATAACATTATGAGCTGTCATAGAGCCTTGGTTACCCCAACTAAGATTTATTGCCTTGGTCCCGAGCTTGAAACCTCAAACCATGTGGTAAAGCACTTTGCATCCTGTGCCTCGGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCTGTATCGACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTTAAAACTGAAATATATAAGCGAATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGTTCAAATTCTGTTTGGTTATTTGCCTCTAATGACAATGTGAAAGCAACTGATATCAGAGAATGGATGGGATGCTTCAATAATATACGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCCCTCAAGATGTAGAGGTAATTCCTGATATTGAAGTTACCTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATCTCCCAATCTTTTGGTAGGCAAGTTGCTCAAAAGCTCAAGTTAGATCATACTCCTTCAGCATTTCAAATTCGGTTTGGAGGATATAAAGGTGTCATAACTGTTGATCGCCATTCATTTAGGAAGTTATCATTGCGCAACAGCATGCTTAAGTTTGAATCCAAAAATAGGATGCTTTGTGTCACAAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGCATTTTTGGCAAGGCAACAGGACCAATTGAATTTGTTAGGAAGGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAGGTTTGAATGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAGTTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTACTATGCATACCAATTATCTGACTTGAAAAGTAGAAGCCGAATATTTGTTCCCAAGGGTCGAGTCTTAGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGTGAAGTATTTGTTCGTGTAACAGTGAAAAGAACTACGGAAAAGTTTGATGATAACTTAAGGAAAGGGGGTGACGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACGAAAAATCCTTGTCTTCACCCAGGAGACGTAAGAGTGCTTGATGCTATCTACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAACGGACATAGGCCCCATCCAAACGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATCCCAGCTCAAACTGAGGCTCCAATGGACTACACAGGACGGAGACCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACATTTTTTTGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACTGCACATCTAGTTCACGCTGACCGTGAACCAGATAAGGCTAAGAGTAGAAAATGTTTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAGAGTTTTAAAACCAAGAGAATTTCCAGATTTCATGGAGAGGGTGGAGAAGCCTATGTACATCTCCAAGGGGGTATTAGGAAAACTTTATCGTGCTATAATTGAGTCTCAAATGCAAATTAAATATAGTTTTGTGTGGTCAGAGAAGCTTGCTGAAGAAGCATATGATCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTACGCACAGAAGATGAGCAGTTTGATGAACTTCTATGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCACGAATATCGTCCCATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCAGGAAAGCTCATGTTTTCTTAGCTTCCCATGGATAGTTGGTGAGGTTTTGTTGCAGATAAAGTCTGTAAACAAAGCAGTTCAAAGATGA 3360 0.4333 MGTTTKPLSHTVSVFNIPRSATAKDLLHFIESKVGSSTVFALEIFSDNVNWKSRGAGRVQFEALDAKSRALSLSQLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGLMLSDDRMSVLESWEGVAGLVVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIYKKKMGPDVATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVFTSLPLYKENLRDLVLEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEEIRAVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQKRLIDNNIMSCHRALVTPTKIYCLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCFSDGIGKISQSFGRQVAQKLKLDHTPSAFQIRFGGYKGVITVDRHSFRKLSLRNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEAFLARQQDQLNLLGRMLTDSKAALDVLEGLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRSRIFVPKGRVLVGCLDETGLLNYGEVFVRVTVKRTTEKFDDNLRKGGDDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTEAPMDYTGRRPRIMDHKVTLEEIQHFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVEKPMYISKGVLGKLYRAIIESQMQIKYSFVWSEKLAEEAYDRSLEVNGFEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQESSCFLSFPWIVGEVLLQIKSVNKAVQR* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2050 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Pvu3g2050 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Pvu3g2050 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 1116 IPR007855 GO:0003968
Pvu3g2050 1119 SUPERFAMILY RNA-binding domain, RBD 6 88 IPR035979 GO:0003676
Pvu3g2050 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 6 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2050 Pvu-Chr3 41147897 41152535 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2050 K11699 - gmx:100808274 1969.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2050 3 41147897 41152535 Pvu3g2050 3 41147897 41152535 ECH