Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2038 ATGTTTCCTCCTCGTCATTACACAACATGTCTTCTTCTTCTTCTTTTCCTCGTACTTTCCGACCTCTCCATATCCCAATCACAATCTCCTTCGGCTGCCAAGAGAAAACGCATGAAAGAGAAAGTTCGCAATATGTTTTACCACGCATATGACAACTATATGACTTATGCCTTTCCGCATGATGAGCTTAAACCTCTCTCTAAAACTTTCACCAACTCCCTAAGTGAGTTGGGGAATTTGAAGCTTGAACACTTGCCTCAAGACTATCATGGCTCTGCCCTTACACTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGAAATAGCACTGAATTTGAGAGGGCAGTGCTTTGGCTATCAGAAAATCTGACATTTGATGTCGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTGGGAGGACTTGTCTCAGCTCATTTACTTGCATCTGATTCTTCAAAGAAGTTGTTTCAAGGGGCTTACAACAATCAGCTGCTAGTTCTGGCTGAAGATTTAGGGAAACGCTTTCTACCAGCCTTTAATACGCCTACTGCATTGCCGTATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGTACTTCAGGGTGTGGTTCTCTTATTCTTGAAATGGGTGCTTTATCAAAAATGACTGGTGACCCCATATACGAATCAGTAGCTTTACGAGCTCTTCGCAAGCTATGGAGTATGCAGAGCTCATTAAAATTATTTGGAACCACACTGGACGTGGCAACTGGGCAATGGATTGAATATTCATCAGGAATTGGAGCTGGGGTTGATTCCTTCTATGAGTATCTACTCAAAGCCCATATCCTTTTTGGGAAGGAGGACTTTTGGAAAATGTTTCACTCTGCTTATGTTGCCGTGCAAAAATATTTCAGACACGGTTCTTGGTACCATGAAGCTGATATGAGGACTGGAAGAGCAACTTATTGGCAGCTTACGAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATCTTAGTGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGAGATACGGAGTGCTACCAGAGAGGTATTTGCTGGACCACCAGATGATTCATCCTACTGAAAAATATTATCCCTTACGTCCTGAATTGGCTGAGTCAACCTTCTACTTATATCAAGCCACTAAAGATCCATGGTATATGGAAGTTGGTGAATCAATAGTCAATTCCATTAATTTATACACCAAAGTTGAAGGTGGGTTTGCAAGCATTAAGGATGTGACAACTATGCAGTTGGAAGATCATCAGCATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTATTTGACGATTCGTTTGTACATGAGAATAATTATGTATTTACAACTGAAGGTCATCCTCTTCCAGTACTCAGCAATTGGCATGAAGAGCTTCCACAAGCTTATGTTCCAACTAATTGGACTTTTGTGAAGAGGCAACCAAGAGTGAGTCGAATCAGCTCAATGTCTCTGCAAGTATGCCCTGCTTTGAATTTAAAGTCAGGTCAACATATTGAGAGTGCTTGCCATATCCCTGATGCTCGTAGTGACTTCAGGTGTTTGACCGATGAAGATTGTGGAGTTGATGCCACTACATGCAGAAGAAGATCATGCAGCATGGCTGGTTATTGTGGGTTATGGCTCATCGTATGA 1719 0.4142 MFPPRHYTTCLLLLLFLVLSDLSISQSQSPSAAKRKRMKEKVRNMFYHAYDNYMTYAFPHDELKPLSKTFTNSLSELGNLKLEHLPQDYHGSALTLIESLSSLVIMGNSTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKLFQGAYNNQLLVLAEDLGKRFLPAFNTPTALPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPIYESVALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWKMFHSAYVAVQKYFRHGSWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDLSAANSSHREFFHVWKRYGVLPERYLLDHQMIHPTEKYYPLRPELAESTFYLYQATKDPWYMEVGESIVNSINLYTKVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFVHENNYVFTTEGHPLPVLSNWHEELPQAYVPTNWTFVKRQPRVSRISSMSLQVCPALNLKSGQHIESACHIPDARSDFRCLTDEDCGVDATTCRRRSCSMAGYCGLWLIV* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 45 65 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 130 148 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 180 199 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 271 288 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 328 344 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 385 409 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PRINTS Glycosyl hydrolase family 47 signature 444 464 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PANTHER ALPHA-MANNOSIDASE I MNS5 16 571 - -
Pvu3g2038 572 Pfam Glycosyl hydrolase family 47 45 478 IPR001382 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 16 571 IPR044674 GO:0004571|GO:1904380|GO:1904382
Pvu3g2038 572 SUPERFAMILY Seven-hairpin glycosidases 35 489 IPR036026 GO:0004571|GO:0005509|GO:0016020
Pvu3g2038 572 Gene3D - 27 489 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2038 Pvu-Chr3 40990060 40998952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2038 4 569 Glycoside Hydrolase AT1G27520 74.868 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2038 K10084 - gmx:100793674 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2038 3 40990060 40998952 Pvu3g2038 3 40990060 40998952 ECH