Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2026 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCCTCCGCCGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCGAAATTGAAGCAATATAAAATCGATGCGCGCCGCGAACAGTGGCTATCGCAAGTTTCAGGTGCGGTGAAGAGTAAGGGATGCAAGGACGGTGTGGAAGATGACATCGTTCGCGCGCCGCCGCCGGCTGTAAATCACGGCAAGCTCTCGTTGGAGCCTCTTAACACGAGGCGCGAAGGCGAAGAGGACGATGGATTGGTCCATCATGACAGCGATTCGGAGTCTCCTACCAACTGTCCCGCCGGCGTGTTGTGCGGCAACGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGGAGCAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCTGGGAACATTACCGAGGAGGAGGAAGAAGAAGAAGAAGGTGAGGACGATGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAAACCCTTGTTCTGATTCACCCCCTGTGGTTTTGCCTCGTGAAGGGTCCAATTTAGGGTCTCCGAATTCAAAACCCGAGAGTAGTAGATTGGTCCCTTGGGGCTCTGGTAGTAACCGAGCGTGGAGGGCAGATGACGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGGCGCTGCGTAGGAGGGGTCCCCTGGGGTCGTATCTCCACGCCGTCCCCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAATTTCTTGCCATGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGGCGTTGTCCCGGGTGTAGGAAGCCTTATGAATGTGAACCTGTTGAGACAGAGGCGAGTGTGCATGGAGGCAGCCTCACTCTTCGGTTGGCACGTTCCTGCAGCATGATCGAGAGATCTTGA 1020 0.552 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQVSGAVKSKGCKDGVEDDIVRAPPPAVNHGKLSLEPLNTRREGEEDDGLVHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNITEEEEEEEEGEDDDDGCLDDWEAMADALAADDKHENPCSDSPPVVLPREGSNLGSPNSKPESSRLVPWGSGSNRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWGRISTPSPCPICCEDLDLTDTNFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGSLTLRLARSCSMIERS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2026 339 CDD mRING-HC-C4C4_CNOT4 264 307 IPR039515 -
Pvu3g2026 339 MobiDBLite consensus disorder prediction 177 216 - -
Pvu3g2026 339 MobiDBLite consensus disorder prediction 81 100 - -
Pvu3g2026 339 MobiDBLite consensus disorder prediction 197 215 - -
Pvu3g2026 339 MobiDBLite consensus disorder prediction 146 164 - -
Pvu3g2026 339 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 337 IPR039780 GO:0004842|GO:0030014
Pvu3g2026 339 MobiDBLite consensus disorder prediction 1 164 - -
Pvu3g2026 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 321 IPR013083 -
Pvu3g2026 339 SUPERFAMILY RING/U-box 260 315 - -
Pvu3g2026 339 Pfam RING/Ubox like zinc-binding domain 264 310 - -
Pvu3g2026 339 ProSiteProfiles Zinc finger RING-type profile. 264 306 IPR001841 -
Pvu3g2026 339 MobiDBLite consensus disorder prediction 101 144 - -
Pvu3g2026 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2026 Pvu-Chr3 40894738 40896349 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2026 - - var:108330419 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2026 3 40894738 40896349 Pvu3g2026 3 40894738 40896349 ECH