Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2022 ATGACCCTTTCTCTTTCATCTCCTATCTCTGTACCCAACCCTTCACCTTTCTCCCCCACGCTCCTCAACCCAACCACCGCCCTCCGCCAACTCTTCTTCGCAACCTCCCCCAAACGAATTTTCAAGTTCCAATCACGCGCCACCAAGTTCAAGGAGCTCATCCCCATAAACCCCTCCGTGACGGTGGAGAAGGGAAAGTACAGCTACGATGTGGAAACCCTAATCAACCGCCTCACCGCGCTTCCGCCTCGTGGAAGCATCGCGCGGTGCCTTGACCCCTTCAAAAACAAGCTCTCCCTCAACGACTTCGCCCTCGTGTTCAAGGAGTTCGCGCAGCGCGGGGATTGGCAGCGCTCGCTGCGTCTCTTCAAGTACATGCAGCGCCAGCTGTGGTGCAAGCCCAACGAGCACATATGCACCATCATGATCACGCTCTTGGGTCGCGAAAGCTTGCTCGACAAGTGTCGCGAGGTGTTCGACGAAATGCCAAGCAACGGCGTGGCGCGCACCGTCTACGCTTACACCGCCATCATCAACGCTTATGGCCGTAACGGCCAGTTCCAGGCCTCGCTTGAACTCCTCGATGCAATGAAGCAGGAGAGGGTTTCGCCGAGTATTTTGACTTACAACACTGTGATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAGGGGTTGTTAGGATTGTTTGCTGAAATGAGACATGAGGGGATTCAGCCTGATGTTATCACTTATAATACTTTGCTTTGTGCTTGTGCTCATAGAGGGTTAGGTGATGAGGCTGAAATGGTGTTTAGGACCATGAATGAAAGTGGGATAGTTCCTGATATCAATACTTATAGTTATCTTGTTCAGACGTTTGGGAAGTTGAATAGGTTAGAGAAGGTTTCGGATCTTCTTAGGGAGATGGAATCTGGGGGTAATTTGCCGGATATTACTTCTTATAATGTGTTATTAGAGGCTCATGCTGAATTAGGATCTATCAAAGATGCGATGGGCGTGTTTAGGCAGATGCAGGCTGCAGGGTGTGTGCCGAATGCGGACACGTATAGTATTTTGTTGAATTTGTATGGGAAGCACGGGAGGTATGATGATGTTCGTGAACTTTTTCTTGAGATGAAAGTAAGTAACACGGATCCTGATGTGGGTACCTATAACATTCTCATACAGGTCTTTGGGGAGGGAGGGTACTTCAAGGAGGTGGTCACTTTGTTTCATGACATGGTGGAGGAAAATATTGAGCCCAACATGGAGACTTACGAGGGCTTGATATTTGCTTGTGGGAAGGGAGGGCTTTATGAAGATGCCAAGAAAATTTTAATGCATATGAAAGAGAAAGGAATAGTGCCGACTTCCAAGGCGTACACTGGGGTGATTGAAGCGTTTGGGCAGGCTGCACTGTATGAAGAGGCTCTTGTTGCATTTAACACTATGAAAGAAGTTGGAAGCAACGCAACCCTTGAGACCTACAATTCGTTTGTTCATGCATACGCAAGAGGGGGATTGTACAAAGAAGCGGAAGCAATTTTATCCAGGATGAATGAGTCAGGTTTAAAACGGGATGTGAATTCATTCAACGGTGAGATTGAAGCTTTTAGGCAAGCAGGTCAGTATGAAGAGGCTGTTAAAGCTCATGTTGAAATGGAAAAAGCAAATTGTGAACCTAATGAGCTGACACTTGAAGCAGTGTTAAGTGTATACTGCACTGCTGGGCTTGTTGACGAGAGTGAGGAGCAGTTCCAAGAAATCAAAGCTTCAGGACTACTTCCCAGTGTCATGTGCTACTGCATGATGCTAGCTCTTTATGCAAAGAATGACAGATCAAAGGATGCCTATAATTTAATTGATGAAATGATCAAAATAAGGGTGTCGGATGTCCATCAAGTGATTGGACAGATGATCAAGGGAGATTTTGACGACGAGTCTAATTGGCAGATTGTGGAATACATCTTTGACAAGCTCACTTCCGAAGGGTGTGGGTTGGGGATGAGGTTCTACAATGCACTGTTAGAAGCTCTTTGGTGGATGTTTCAGCGAGAAAGGGCTGCTAGAGTTCTCAATGAAGCATCAAAGCGAGGGCTGTTCCCTGAACTTTTTCGTAAAAGTAAACTAGTATGGTCTGTGGATGTACACAGGATGTCAGAAGGTGCTGCATTAACAGCACTATCAGTTTGGCTGAACAATATGCAGGAAATGTTCATGATTAGCGAGGATCTTCCTGTGCTTGCATCAGTTGTTGTGGTTCGGGGTGAGATGGAGAAAACCATAGATGCCCAAGATTTCCCTATCGCAAAGGCTGCCATGTCATTCTTGCAGGATAATGTCCCATCATCATCCTTTACTTTCCCTGAATGGAACAAAGGTCGCATTGTTTGTCAACAGTCACAACTGAGACAAATTCTGAGTGGCACTGAATCATCTTCTAGTAGGAAAAAAATGGGTAAATTAATATCTTTGAGTAATTCCCCATTGACTACTGCAGGTGCTAAAGCATCCAAATCTGATCGTAAAGCTAACGATGTTGATTCTAGAACCGATAGTACGCGAACTGAGCTTCTAACCAGTGCAGTTTAG 2574 0.4611 MTLSLSSPISVPNPSPFSPTLLNPTTALRQLFFATSPKRIFKFQSRATKFKELIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQLWCKPNEHICTIMITLLGRESLLDKCREVFDEMPSNGVARTVYAYTAIINAYGRNGQFQASLELLDAMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLCACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSDLLREMESGGNLPDITSYNVLLEAHAELGSIKDAMGVFRQMQAAGCVPNADTYSILLNLYGKHGRYDDVRELFLEMKVSNTDPDVGTYNILIQVFGEGGYFKEVVTLFHDMVEENIEPNMETYEGLIFACGKGGLYEDAKKILMHMKEKGIVPTSKAYTGVIEAFGQAALYEEALVAFNTMKEVGSNATLETYNSFVHAYARGGLYKEAEAILSRMNESGLKRDVNSFNGEIEAFRQAGQYEEAVKAHVEMEKANCEPNELTLEAVLSVYCTAGLVDESEEQFQEIKASGLLPSVMCYCMMLALYAKNDRSKDAYNLIDEMIKIRVSDVHQVIGQMIKGDFDDESNWQIVEYIFDKLTSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGAALTALSVWLNNMQEMFMISEDLPVLASVVVVRGEMEKTIDAQDFPIAKAAMSFLQDNVPSSSFTFPEWNKGRIVCQQSQLRQILSGTESSSSRKKMGKLISLSNSPLTTAGAKASKSDRKANDVDSRTDSTRTELLTSAV* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2022 857 MobiDBLite consensus disorder prediction 833 847 - -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu3g2022 857 SMART SMR_2 705 795 IPR002625 -
Pvu3g2022 857 Gene3D Tetratricopeptide repeat domain 431 546 IPR011990 GO:0005515
Pvu3g2022 857 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 44 823 - -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Pvu3g2022 857 MobiDBLite consensus disorder prediction 820 857 - -
Pvu3g2022 857 Pfam Pentatricopeptide repeat domain 158 216 IPR002885 -
Pvu3g2022 857 Pfam Pentatricopeptide repeat domain 299 359 IPR002885 -
Pvu3g2022 857 Pfam Pentatricopeptide repeat domain 404 464 IPR002885 -
Pvu3g2022 857 Pfam Pentatricopeptide repeat domain 229 289 IPR002885 -
Pvu3g2022 857 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 44 823 - -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Pvu3g2022 857 Gene3D Tetratricopeptide repeat domain 222 306 IPR011990 GO:0005515
Pvu3g2022 857 Gene3D Tetratricopeptide repeat domain 547 625 IPR011990 GO:0005515
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Pvu3g2022 857 Pfam PPR repeat 594 621 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 529 557 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 419 451 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 384 416 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Pvu3g2022 857 TIGRFAM PPR: pentatricopeptide repeat domain 138 168 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Smr domain profile. 708 798 IPR002625 -
Pvu3g2022 857 Gene3D Tetratricopeptide repeat domain 309 427 IPR011990 GO:0005515
Pvu3g2022 857 Gene3D Tetratricopeptide repeat domain 82 221 IPR011990 GO:0005515
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Pvu3g2022 857 Pfam Pentacotripeptide-repeat region of PRORP 469 573 IPR033443 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 240 IPR002885 -
Pvu3g2022 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2022 276 715 Glycosyltransferase AT1G05670 21.542 6.12e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2022 - - gmx:100797731 1509.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2022 3 40845904 40852787 Pvu3g2022 3 40845904 40852787 ECH