Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2012 ATGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCCAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGGTTCTTTGAGAAGTGCACACATAGGATCGTGAGTTACTTTTCCCCTTACATTCGAATCTCCTTCCATGAATACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCGGCTGTGGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAAATGGGTAAGGATAGCAGCAACTTGGTGTTGACTATGGATGAGTATGAAAGGGTAACGGATGAGTACGAGGGTGTCAAAGTTTGGTGGGTCTCTAGCAAAGTTATGTCACCAACGAGGTCTCCAATGTCTTATTATCCAGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGGGACATAATAACCGAGTCCTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACCATGTGGAGCCACATTGTCTTTGAGCACCCTGCAACTTTTGAAACAATGGCCTTGGAGCCTGAGAAGAAAAAGGAGATCATTGAGGATTTGGTCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAGAGGGGGTACCTTCTTCATGGCCCTCCTGGAACAGGAAAGTCCACTATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTAAAGGACAACACAGAGTTGAGGAAGCTTCTGATTGAGACAACCAGTAAGTCTATAATTGTTATTGAAGACATCGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAGGCAGATAAGTTGTCGGACGAGGAGACGGATAAGGATGTTGTTGGAAGGAAAGAGGGCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACCAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAGCTCTCCTATTGCACTTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTGAAGCTAGAAACTCATCCTTTGTTTCTCACTATCAAGAGGCTAATAGGGGAGGCCAACATCACCCCAGCTGATGTTGCAGAAAACCTCATGCCCAAGTCCCCACTGGATGATCCTCACAAGTGTCTCTCAAACTTGATTGAGGCACTTGAGGAAGCTGTAAAAGCTGAGGAGCTGGAGCAGAGTTGTCCCATTGAACATGAGGAACTTCTGCAACAAAATGGGTCCATTAAGGAAAATGGTGAGCTTCCAGCTGACCAAGCAATGAATCAATGCCAGCTACGGCTGTGTAATGGTACATAA 1524 0.4573 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFFEKCTHRIVSYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDEYEGVKVWWVSSKVMSPTRSPMSYYPEQEKRFYKLTFHNKYRDIITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLHGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDEETDKDVVGRKEGKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFLTIKRLIGEANITPADVAENLMPKSPLDDPHKCLSNLIEALEEAVKAEELEQSCPIEHEELLQQNGSIKENGELPADQAMNQCQLRLCNGT* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2012 507 Coils Coil 447 467 - -
Pvu3g2012 507 Pfam ATPase family associated with various cellular activities (AAA) 246 393 IPR003959 GO:0005524|GO:0016887
Pvu3g2012 507 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Pvu3g2012 507 PANTHER BCS1 AAA-TYPE ATPASE 4 477 - -
Pvu3g2012 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 460 IPR027417 -
Pvu3g2012 507 PANTHER ATP BINDING PROTEIN 4 477 - -
Pvu3g2012 507 SMART AAA_5 241 396 IPR003593 -
Pvu3g2012 507 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Pvu3g2012 507 CDD AAA 242 394 - -
Pvu3g2012 507 MobiDBLite consensus disorder prediction 317 339 - -
Pvu3g2012 507 Gene3D - 390 457 - -
Pvu3g2012 507 MobiDBLite consensus disorder prediction 317 341 - -
Pvu3g2012 507 Gene3D - 201 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2012 Pvu-Chr3 40738787 40740734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2012 206 392 Miscellaneous Gene Families AT5G58870 29.744 1.08e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2012 - - gmx:100798176 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2012 3 40738787 40740734 Pvu3g2012 3 40738787 40740734 ECH