Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1983 ATGTCTACTCCCTCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCACCTGCAGGAATCAGTGGTGCCCCTCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGACGGAGGCACGTTTAAGTTGACTCTCCAGTTTACTGAGGATTATCCTAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAATCAATGGAGTCCTATATACGACGTAGCTGCAATACTCACTTCTATCCAGTCATTACTTTGTGATCCCAACCCAAATTCTCCTGCAAATTCAGAAGCAGCTCGGACGTTTAGTGCAAACAAGCGCGAGTACAATAGACGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA 459 0.4336 MSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARTFSANKREYNRRVREIVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1983 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Pvu3g1983 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Pvu3g1983 152 SMART ubc_7 7 150 - -
Pvu3g1983 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Pvu3g1983 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Pvu3g1983 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Pvu3g1983 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Pvu3g1983 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Pvu3g1983 152 CDD UBCc 7 145 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1983 Pvu-Chr3 40437707 40440807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1983 7 120 Miscellaneous Gene Families AT1G17280 31.092 4.98e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1983 K10573 - jre:108989809 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1983 3 40437707 40440807 Pvu3g1983 3 40437707 40440807 ECH
Pvu2g0922 2 14881989 14885132 Pvu3g1983 3 40437707 40440807 PCT