Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1961 ATGGCAGCGGCACCTGCAGCTACTTTTACTATTGGATCCACCGCCTCCCTTGGCCAAAGAGGAAGCTCTCTTCCTCAATCAAGGTCTTTTGGGTTGAAATTCAACTCCCAGAATCCTTTGAAGAGTTTCTGTGGCCTCAAGGCTATGTCATCTGTGAGATGTGAGTCAGAATTATCTTTCTTAGGTAACAAAAGTGGTTCTGCTCTGCGGGCATCCTTTGCATCCAAGGCTCAGAAGGAAAACAGCCAGAAATTCAACTACCAGTTGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATTGGGCAGCCGCTCTCGCTTCTCATCAAGATGTCCCCTTTAGTGTCCGACTTGCATCTCTATGATATTGCAAATGTCAAGGGAGTCGCTGCTGATATCAGTCACTGCAACACACCCTCACAAGTCAAGGATTTCACTGGAGCTTCTGAGTTGGCAAATTGTTTGAATGGTGTGAATGTTGTTGTCATTCCTGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGATGACCTTTTCAACATCAATGCTGGAATAGTCAGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCTGGTGCTTTTATTCTAATTATCAGTAACCCAGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGAAACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTTGCCCAGAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAGGTTGAGGAGTTAACGGTCAGGATTCAAAATGCCGGAACTGAAGTTGTGGAAGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCGATGGCATATGCAGCTGCTAGATTTGTTGAATCGTCTCTGCGAGCACTTGATGGAGACGGGGATGTGTATGAATGCTCATTTGTGCAATCAGATTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAAGAAAGGTATCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGATTATGAGCAGAAGGCTTTGGAAGCCCTTAAGCCAGAACTCAAGTCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAG 1242 0.4694 MAAAPAATFTIGSTASLGQRGSSLPQSRSFGLKFNSQNPLKSFCGLKAMSSVRCESELSFLGNKSGSALRASFASKAQKENSQKFNYQLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVKDFTGASELANCLNGVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFILIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGKKGIEALIPSDLQGLTDYEQKALEALKPELKSSIEKGIAFAQKQAVAA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1961 413 Gene3D - 93 239 - -
Pvu3g1961 413 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 26 413 - -
Pvu3g1961 413 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Pvu3g1961 413 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
Pvu3g1961 413 SUPERFAMILY LDH C-terminal domain-like 239 406 IPR015955 GO:0003824|GO:0016616
Pvu3g1961 413 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 96 407 IPR010097 GO:0006099|GO:0030060
Pvu3g1961 413 CDD MDH_glyoxysomal_mitochondrial 95 406 IPR010097 GO:0006099|GO:0030060
Pvu3g1961 413 PANTHER MALATE AND LACTATE DEHYDROGENASE 26 413 - -
Pvu3g1961 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 239 IPR036291 -
Pvu3g1961 413 Gene3D - 240 411 IPR015955 GO:0003824|GO:0016616
Pvu3g1961 413 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1961 Pvu-Chr3 40187069 40189414 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1961 K00026 - gmx:100783173 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1961 3 40187069 40189414 Pvu3g1961 3 40187069 40189414 ECH