Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1960 ATGAATTCTATTGCTCTCAAAACCTTCGTCGGCCTCCGCCAAACCTCGCCGGATGCACAGCATTTCGCCGCCCAGCCAAGACTCCCCCCTCCCCACCGCAAGTTAAGGATCGTGGCCGGGAAGTTCAGCCCCAAGCTGCAGGGGCGCAACCTACGAGTAGCGGTGGTGGGCGGTGGTCCCGCCGGCGGAGCGGCGGCGGAGACGCTGGCGAAGGGTGGCGTGGAGACTTTCCTTTTCGAGCGGAAGCTGGACAACTGCAAGCCGTGCGGGGGAGCGATTCCGCTGTGCATGGTGGGGGAGTTCGACCTGCCGCTGGACATCATCGACCGGCGGGTGACGAAGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATCGGGAGAACGCTTAAGCCGCACGAGTACATAGGCATGGTCCGGCGAGAGGTGCTGGACGCTTACCTGAGAGAGCGGGCGAAGGAGAATGGGGCCAATGTCATCAACGGGCTGTTCACGAAAATGGATATTCCGAAGGATAACAACACCCCCTACGTTCTCCATTACTCTTCCTACGATAACAAAACCGGCGGGGCTGGTGAGAAGCGTACCTTGGAAGTTGACGCTGTCATTGGTGCTGATGGCGCTAATTCTAGAGTCGCCAAGTCTATTGATGCTGGTGAATATGAGTACGCCATCGCTTTTCAGGAGAGGGTAAAAATTCCGGATGATAAGATGGCGTATTACGAGGACCTTGCGGAGATGTACGTGGGCGATGATGTTTCTCCGGATTTCTACGGGTGGGTATTTCCAAAATGTGACCATGTGGCTGTTGGCACTGGTACCGTGACACACAAGGGGGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCAGAAGACAAAATTTTGGGAGGCAAGATCATCAGAGTGGAGGCTCACCCTATCCCGGAACATCCGCGGCCGCGAAGGTTGTTGGGAAGAGTGGCCCTGGTGGGTGATGCTGCTGGGTATGTAACGAAATGCTCCGGAGAGGGGATATATTTTGCGGCCAAGAGTGGGAGGATGTGTGCAGAGGCAATTGTTGAAGGTTCAGAGAATGGGAAGAGGATGGTGGAAGAAGGGGACTTGAGAAAGTACTTGGAGAAGTGGGATAAGGCTTATTGGCCCACTTACAAGGTGTTGGATGTGCTTCAGAAGGTGTTTTACAGGTCCAACCCTGCGAGGGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTGCAGAAGATGACCTTTGATAGCTATTTGTACAAGACAGTGGTGCCTGGCAATCCACTGGAGGATCTGAAATTGGCCATTAACACCATTGGGAGCTTAGTTAGGGCCAGTGCCATAAGGAGGGAGATGAATAAACTTAACGTATGA 1389 0.5378 MNSIALKTFVGLRQTSPDAQHFAAQPRLPPPHRKLRIVAGKFSPKLQGRNLRVAVVGGGPAGGAAAETLAKGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRERAKENGANVINGLFTKMDIPKDNNTPYVLHYSSYDNKTGGAGEKRTLEVDAVIGADGANSRVAKSIDAGEYEYAIAFQERVKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKAYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRASAIRREMNKLNV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1960 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Pvu3g1960 462 Gene3D - 50 461 IPR036188 -
Pvu3g1960 462 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Pvu3g1960 462 PANTHER OS01G0265000 PROTEIN 42 461 - -
Pvu3g1960 462 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Pvu3g1960 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Pvu3g1960 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Pvu3g1960 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Pvu3g1960 462 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Pvu3g1960 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 225 IPR023753 GO:0016491
Pvu3g1960 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 42 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1960 Pvu-Chr3 40182112 40184444 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1960 K10960 - gmx:100779933 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1960 3 40182112 40184444 Pvu3g1960 3 40182112 40184444 ECH