Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1948 ATGGGTTCTCCCGTTGAAGACCGATCAGAGATAGTGTTCTTCGATGTGGAGACCAGCGTTCCCACTCGAACAGGCCAGGGTTTTGCCATTCTCGAATTCGGAGCCATTTTGGTTTGCCCCAAGACGCTCACGGAGCTCAACAACTATTCCACTCTCGTCCGACCCGCCAATCTCTCCGTCATCTCCCCCTTGTCCGAGCGTTGCAATGGCATCACCGCCAACGCCGTCTCCACCGCGCCGACTTTCGCCGACATTGCTCACCTCGTCTACGACCTTCTTCACGGGAGGATTTGGGCGGGTCATAATATCATAAGGTTCGACTGTGTTCGGATTAGAGATGCTTTTGCTGAGATTAATCAGCCGCCACCTGAACCTAAGGGGACTATTGACTCTCTAGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTGACATGAAGATGGCTACTCTTGCTACTTATTTTGGACTTGGACGCCAGACACATAGGAGCTTAGATGATGTTCGGATGAATCTTGAGGTCCTCAAATACTGTGCAACGGTTCTATTCTTGGAATCAAGTCTCCCGGACATATTCACTGCAAACAGTTGGGTTTCACCAAATGCTACAACAAGAAGCCGCAGTAATGGGAAATCTCCATCACAGGGGGGCTTATTAAATATTAATAAGGGTTCTGTATTACAATCTCCTGCTGTTGAATCCAAAGACAAAATTCATCCTATAATTTCTTTTGCAATGAGCAGCCCAACAAGGGATGCCCAGAATACTGCAGATCCTAATATTGTTCAATCGGATCCTTTTAATTTGAGTGCTCTGGAGGAAGAAATAAATAGAGAACCCATTAAGTCAGATGTTTCCATGGTGGAAAAACCCATGCAAGAGTCATCTGATTTGGCTTCCTCGTCTTCTATGTTTCAGCCTTGCAGCAGCTCTATTCTTGTTTTAGAACCTGATGGAGTATGTGTCCCTTCTATTGATGCATCTCTTGTTCCATCTTTTCATGGCAGTCAAAGGATAGAATTACTGCATGAAGGTTTCCCATTTCATCTTCATTGTACTGATTTGAAAGTGCGGTTTGGAATAAACACAAGGTTTTCTGATAATGCTGGCCGGCCACGATTGAGTTTTGTGGTTGATTCATCACCAATTCTATGTAATGTTCTTGATGCATGTGACCGCGTTGCTCAGAAGTTAACAGTGGATTCTGGTAGCATCTCTGATTGGAGGCCTGCTGTCATTAGGAAAGAAGGTTTCTTCAACTATCCTACTGTCAGATTGCACATACCTACAGCAGTAGTCGCAGACGTTGCCATTTATGCCACAGAAATATATCAGAAAGAATCTTCTGGAGCAGTGCAAAGACTTCTCTTCAGTAGATTTGATGCTGAAGAACTTGGTTCCTTGTTCATGCCTGGGACATTTGTTGATGCCTTCTTTTCCTTAGATCCGTATGACTATCAGCAGAATGCAGGGATTAAATTAGTTGCCAAAAAATTGATCATTCATTGCAAATAG 1515 0.4409 MGSPVEDRSEIVFFDVETSVPTRTGQGFAILEFGAILVCPKTLTELNNYSTLVRPANLSVISPLSERCNGITANAVSTAPTFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEPKGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTANSWVSPNATTRSRSNGKSPSQGGLLNINKGSVLQSPAVESKDKIHPIISFAMSSPTRDAQNTADPNIVQSDPFNLSALEEEINREPIKSDVSMVEKPMQESSDLASSSSMFQPCSSSILVLEPDGVCVPSIDASLVPSFHGSQRIELLHEGFPFHLHCTDLKVRFGINTRFSDNAGRPRLSFVVDSSPILCNVLDACDRVAQKLTVDSGSISDWRPAVIRKEGFFNYPTVRLHIPTAVVADVAIYATEIYQKESSGAVQRLLFSRFDAEELGSLFMPGTFVDAFFSLDPYDYQQNAGIKLVAKKLIIHCK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1948 504 PANTHER PROTEIN NEN3 6 503 - -
Pvu3g1948 504 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 6 503 - -
Pvu3g1948 504 MobiDBLite consensus disorder prediction 200 220 - -
Pvu3g1948 504 CDD DEDDh 12 176 - -
Pvu3g1948 504 Gene3D - 5 182 IPR036397 GO:0003676
Pvu3g1948 504 SMART exoiiiendus 10 184 IPR013520 -
Pvu3g1948 504 Pfam Exonuclease 12 175 IPR013520 -
Pvu3g1948 504 SUPERFAMILY Ribonuclease H-like 10 180 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1948 Pvu-Chr3 40073171 40077270 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1948 - - ccaj:109808157 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1948 3 40073171 40077270 Pvu3g1948 3 40073171 40077270 ECH