Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1927 ATGTCGGGTGCCAAGAAATCTCCTTTGAAGGTTGCTAAACCTAGTTCTGTTGAATCTTGGACTAATCCATTTGATTCTGATGATGAGGAAAAGAATACCAAAAGGTATAGTTCCTCGAGAAAGACTTCTTCGGATCGCGCACTTGTTTCACTGGAAGTTAACACCAACCCCTTTGATGATGACATTGATGCCACTAAGAAATCTTCTTCGGTTTCGTATGCATTTCAATCGGCCAACCGGAACAGGTACAAGAATGGTTTTCGCGATTCAGGCGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTTTACAAGGCTGAAGAGACTACAAATTCAGTCAATAGTTGTTTGAAGATAGCAGCGAATATAAGAGAGGATGCCACCAATACACTAGTCACCCTTCATCAACAGGGTGAGCAAATTATCAAGAGTCACCATGTTGCTGCTGACATTGACCACGATTTAAGCCGGGGGGAAAAACTCTTGGGAAGCCTTGGTGGCCTTTTCTCCAAAACTTGGAAACCAAAGAAGACGCGAGCAATAACAGGCCCAGTTATTGTTGGAGATGACCCAGTGAGGAGCAAGGGCAGTCATCTGGAGCAGAGAGAGAAGTTGGGGCTGACTTCTGCCACCAAAGGGCAGTCCAAGCTGCGGACCCTACCTCAGGAACCAACCAATGCACTTGAAAAAGTTGAGGTTGAAATAAAGAAGCAAGATGATGCACTATCAGATTTAAGTGATATGTTGGGAGAGCTTAAAGACATGGCTGTAGACATGGGATCCGAGATTGAGAGGCATAACAAAGCATTGAATCATCTATACGATGATGTGGATGAGTTGAATTACCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTACTCGGAAAATAA 903 0.4408 MSGAKKSPLKVAKPSSVESWTNPFDSDDEEKNTKRYSSSRKTSSDRALVSLEVNTNPFDDDIDATKKSSSVSYAFQSANRNRYKNGFRDSGGLENQSVQELESYAVYKAEETTNSVNSCLKIAANIREDATNTLVTLHQQGEQIIKSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRSKGSHLEQREKLGLTSATKGQSKLRTLPQEPTNALEKVEVEIKKQDDALSDLSDMLGELKDMAVDMGSEIERHNKALNHLYDDVDELNYRMKGANQRGRRLLGK* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1927 300 SUPERFAMILY SNARE fusion complex 232 298 - -
Pvu3g1927 300 MobiDBLite consensus disorder prediction 1 48 - -
Pvu3g1927 300 Gene3D - 233 299 - -
Pvu3g1927 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Pvu3g1927 300 Coils Coil 231 251 - -
Pvu3g1927 300 SMART tSNARE_6 230 297 IPR000727 -
Pvu3g1927 300 SMART tSNARE_6 101 168 IPR000727 -
Pvu3g1927 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 300 - -
Pvu3g1927 300 MobiDBLite consensus disorder prediction 24 41 - -
Pvu3g1927 300 SUPERFAMILY SNARE fusion complex 94 169 - -
Pvu3g1927 300 Gene3D - 92 169 - -
Pvu3g1927 300 CDD SNARE_Qc 238 296 - -
Pvu3g1927 300 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 300 - -
Pvu3g1927 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 104 167 IPR044766 GO:0005484|GO:0031201
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1927 Pvu-Chr3 39853574 39856440 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1927 K18211 - gmx:100809874 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1927 3 39853574 39856440 Pvu3g1927 3 39853574 39856440 ECH