Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1907 ATGGCACAAACACAAACCCGGAGACCCTGTTCAAGCATCCTCGATTCTCTGGGGGAAGAAATCGTGAGAATCATCGCACCCGTTTCAATATGCATGTTCTTGGTCGTAATATTGGTGTCAATTCTGAACACGGATTCTTCTCTCTTCGACGCATCGATGAGCATGGTCACCATGGCCTACACCGAGACAACCTCAGACTCCACCTGGGACAAATTCCTTGGTGCCCTTTTGAACTCCTTGGCTTTCGTCGTCCTCGTCACCTTCGCAACCTTCATCCTGGTCCTCCTCTTCTACTTCCGATGCACCGGATTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGCTGGGGTTCCTCGGCGGTGAAGTCTCTCTGTTTTTGATCCAACAGTTTAACACTCCCGTTGATTGCATTACGTTTTTCCTCTTGCTGTGTAATTTCGCCGTTGTGGGTGTTATGACCGTGTTTATGTCAAAAATGGCGATTTTTGTGACGCAGGGGTATTTGGTTGTTATTGGAATATTGATTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACCTGGGCCTTGCTTGTTGCTATGGCTCTGTATGATGTGGCTGCAGTTTTGTTACCAATTGGGCCACTAAGGATTTTGGTGGAGCTTGCAATATCAAGGGATGAGGAAATTCCCGCATTGGTTTATGAGGCTAGGCCAGTGAACCATGGTAATTTGAGTTCTGCGCAGAGGCGGCGGTTGTGGAGGGAAAGGAGGGTTGAGAATTCAAATCTCCCAACTGATTCCAACTCAGCGTTGGGTCATGGCCCCAGTGTTGAACTCCCCTCCGATTCTGATGCAAGTCCCAGCAATAACGCCAACATGGTTAGGGGAAATGCCTCTACAAATGCAAATCTGAGAGCTAGTAGTTCTGGTGCTTCTTATGGTTACGGAAATTTGGTGACTGCAGAAGAGGAACCGGCGCGAGTTCATGGGACTGATTCGGACCTTTCTGCGCCCTTGATCGATCGTGGAAGGAATGTCCAGCACGGTAGGGGGGAAGATGCTGTGCCAAGTGAGAATTTGATGCTAGAAGGAATTGGATTGGGTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGTTACCTTGCTATCATTGCGGGTCTTGGGATAACTCTGATCCTTTTGGCTTTATATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAATAGCATTGGGTGTGTTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTAGTACAATGTTCTTTAAATCTTCTGTTGTTCTAA 1365 0.4645 MAQTQTRRPCSSILDSLGEEIVRIIAPVSICMFLVVILVSILNTDSSLFDASMSMVTMAYTETTSDSTWDKFLGALLNSLAFVVLVTFATFILVLLFYFRCTGFLKLYMAFSTFIVLGFLGGEVSLFLIQQFNTPVDCITFFLLLCNFAVVGVMTVFMSKMAIFVTQGYLVVIGILIAYSFTMLPEWTTWALLVAMALYDVAAVLLPIGPLRILVELAISRDEEIPALVYEARPVNHGNLSSAQRRRLWRERRVENSNLPTDSNSALGHGPSVELPSDSDASPSNNANMVRGNASTNANLRASSSGASYGYGNLVTAEEEPARVHGTDSDLSAPLIDRGRNVQHGRGEDAVPSENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLILLALYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLLF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1907 454 MobiDBLite consensus disorder prediction 258 292 - -
Pvu3g1907 454 Pfam Presenilin 18 444 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu3g1907 454 MobiDBLite consensus disorder prediction 277 292 - -
Pvu3g1907 454 SMART psh_8 73 440 IPR006639 GO:0004190|GO:0016021
Pvu3g1907 454 PANTHER PRESENILIN 11 454 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu3g1907 454 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu3g1907 454 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu3g1907 454 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu3g1907 454 PANTHER PRESENILIN 11 454 - -
Pvu3g1907 454 Gene3D Presenilin 362 446 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1907 Pvu-Chr3 39646444 39647808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1907 5 454 Miscellaneous Gene Families AT2G29900 59.867 3.36e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1907 K04505 - gmx:100799643 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1907 3 39646444 39647808 Pvu3g1907 3 39646444 39647808 ECH