Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1901 ATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAAACTTGGTGCACAGGTTTTATCAGGATTCGAGTTTCTTGACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAAGTGTTCAAGAAATCCATGAGAAGATCATTTCACTGAAGTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCGCATAAGGGAGGTGTGATAGTGTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAGGGATATTTTGTTTTAAATGATGTCTTTAGGTACATTGAGGTGAATGATGCACCGCAGTTAAATTCTGCCTCAGGAAATGTCATCACTGAAAATACTGAGACATTGCATGAGCCAGAATCAGAGGAGACACATTCTCCCAAACATCTTGTGGAAGACCCTGCAACTTCAACTTTGGTAGAGGATGAAAACCATAGTAATGGCGGTGAAGTTTATCATCCTCAGGATGAGGAAGAGGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACTGACTTAAGTCAGAATGATATTGTTACGGTGCATGATTCAACTTCTGCTGCTCAGGATGATGCACCAAAGAGATCATATGCATTCATTGTAATGAAAAGTAATGTAGCATCTGGCCATGTCTACGTTCCCAGACAAGCTGCAAGAGTGGCATCTGCTAAATCTAGTGAACAATGGCCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTAGTGATAGTGCACCTGGGAGTAGTGACCTCCATGAAGAAGCTGAAGGTCACTCCATATATATACGGAACTTGCCGTTTAGCGCAACAGTTGAGCAACTTGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCACGATGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACAAGAGTAAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAATTTGGCGGTGGACGAGGTTATGGCAGAAACGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCGTCATCTTCAGCAGCATGA 1392 0.4418 MAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTSVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVKRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASGNVITENTETLHEPESEETHSPKHLVEDPATSTLVEDENHSNGGEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVHDSTSAAQDDAPKRSYAFIVMKSNVASGHVYVPRQAARVASAKSSEQWPTTAKSTPVPESFAPISDSAPGSSDLHEEAEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHDGIQVRSSKHGFCFGFVEFEELSSMQSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1901 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 363 IPR000504 GO:0003723
Pvu3g1901 463 MobiDBLite consensus disorder prediction 423 442 - -
Pvu3g1901 463 Gene3D - 6 137 - -
Pvu3g1901 463 MobiDBLite consensus disorder prediction 264 301 - -
Pvu3g1901 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 456 IPR039539 -
Pvu3g1901 463 SUPERFAMILY RNA-binding domain, RBD 300 408 IPR035979 GO:0003676
Pvu3g1901 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Pvu3g1901 463 MobiDBLite consensus disorder prediction 180 202 - -
Pvu3g1901 463 SMART rrm1_1 305 376 IPR000504 GO:0003723
Pvu3g1901 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 380 IPR000504 GO:0003723
Pvu3g1901 463 CDD RRM_SF 306 363 - -
Pvu3g1901 463 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Pvu3g1901 463 MobiDBLite consensus disorder prediction 264 290 - -
Pvu3g1901 463 CDD NTF2 13 135 IPR018222 -
Pvu3g1901 463 Gene3D - 288 386 IPR012677 -
Pvu3g1901 463 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Pvu3g1901 463 MobiDBLite consensus disorder prediction 377 463 - -
Pvu3g1901 463 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1901 Pvu-Chr3 39601222 39606550 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1901 K24983 - gmx:100801253 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1901 3 39601222 39606550 Pvu3g1901 3 39601222 39606550 ECH