Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1827 ATGGGTAGTGGAGCTCGTGAAACGAATCGTTTAACAAATGGGGAAGCTGAGAACAGTCTTCACAAACAGGTTTCTCCTGCTCCTGCTGCACTCGACAACTCGCTTTCTGATGCCAGTAATGCAGTTACCGACCCTGATGTTCCTGCTAAGAGGGCCAGGCTGCAGAAGGAATTGACCTTTCAGGATATGTATCAAAATGATGGCGTGTTTGACGAGGATGACGAGGATGACAGTGATTGGGAGCCGTTTCAGTTACCCAAGTGTGTGGAATTTGAAATAAAAAAGTGGTGCTGCAGAAATTGTACTATGACTAACTTGGATTGCTATGACTGTTGCGATATATGTGGGGAGCACAGGGAGTCTAAAATCCTCAGCCATGGGTTTTTTGCATCTCCTTTAGCTCAAGACGAGGATCTGATTGAAGTCCATGGAGATGTAAAAGGACTGAAAGATGTTGGCTCACAGGAATCAGTGGCAAATAGTTCTACGGCAATTGGCTTTGATGAGAGAATGTTGTTGCATGCAGAAGTTGAAAAGAAATCACCTCCACATCCTGAGAGGCCAGATCGTCTTCAAGCCATTGCTGCTAGTCTTGCTAGAGCCGGCATATTTCCTGGAAAATGCTATTCAATTCCTTCTAGGGAAATCACACCAGAAGAACTTATTACGGTTCATTCTTTGGAGCATATTGAGTCTGTGGAGGTTACAACTGAATCACTCTCTAGTTATTTCACTCCAGACACATATGCCAATCAGCATTCAGCACTTGCTGCTAGGTTGGCCGCTGGATTATGTGCTGATCTGGCATCAGCAATTGTTTCTGGACGTGCCAAAAATGGATTTGCCTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACAGGCAATGGGGTTCTGCCTTCACAATAATGCTGCTGTGGCAGCATTGGCTGCTCAAGCTGCAGGGGCTAAGAGGGTGCTAATTTTAGATTGGGACGTTCATCATGGAAATGGAACACAAGAAATATTTGAACAGAACAAATCGGTCTTGTATATATCATTGCATAGACATGAGGGTGGAAAGTTTTATCCTGGTACTGGAGCTGCTGAAGAGGTAGGCAGTATGGGCGCTGAAGGGTACTGTGTGAATATTCCATGGAGCCGAGGAGGAGTTGGTGACAATGACTACAATTTTGCATTTCAGCATGTTGTTCTTCCTATAGCTTCTGAGTTTAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACACATGACGCATATGTTGAATGGCCTCTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGATCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGGTAACCGTTCTGGAAGTCCTCAAAATTCAGATGAAGTTTTGGCCTTCCCTGGGTCCGATTTTTGTGAATTTGGAGTCACAATGGCGGATGTACTGTTTTGAAAAAAAAAGAAAACAGATTAAGAAACGACGCCGACTTCTGGTTCCAATGTGGTGGAGGTGGGGACGAAAAAGTTCCTTGTTCTATTTCATGAACGGCCATCTTCATGAAAAATCAAAGTGA 1698 0.4435 MGSGARETNRLTNGEAENSLHKQVSPAPAALDNSLSDASNAVTDPDVPAKRARLQKELTFQDMYQNDGVFDEDDEDDSDWEPFQLPKCVEFEIKKWCCRNCTMTNLDCYDCCDICGEHRESKILSHGFFASPLAQDEDLIEVHGDVKGLKDVGSQESVANSSTAIGFDERMLLHAEVEKKSPPHPERPDRLQAIAASLARAGIFPGKCYSIPSREITPEELITVHSLEHIESVEVTTESLSSYFTPDTYANQHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAALAAQAAGAKRVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYNFAFQHVVLPIASEFNPDFTIVSAGFDAARGDPLGCCDITPSGYAHMTHMLNGLSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLVTVLEVLKIQMKFWPSLGPIFVNLESQWRMYCFEKKRKQIKKRRRLLVPMWWRWGRKSSLFYFMNGHLHEKSK* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1827 565 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g1827 565 PANTHER HISTONE DEACETYLASE 32 562 - -
Pvu3g1827 565 MobiDBLite consensus disorder prediction 1 48 - -
Pvu3g1827 565 SUPERFAMILY Arginase/deacetylase 160 493 IPR023696 -
Pvu3g1827 565 Gene3D Histone deacetylase domain 160 511 IPR037138 -
Pvu3g1827 565 ProSitePatterns Zinc finger RanBP2-type signature. 96 115 IPR001876 -
Pvu3g1827 565 Pfam Histone deacetylase domain 184 472 IPR023801 -
Pvu3g1827 565 PANTHER HISTONE DEACETYLASE-RELATED 32 562 - -
Pvu3g1827 565 PRINTS Histone deacetylase superfamily signature 286 309 IPR000286 -
Pvu3g1827 565 PRINTS Histone deacetylase superfamily signature 319 334 IPR000286 -
Pvu3g1827 565 PRINTS Histone deacetylase superfamily signature 407 417 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1827 Pvu-Chr3 38852184 38860879 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1827 - - gmx:100804724 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1827 3 38852184 38860879 Pvu3g1827 3 38852184 38860879 ECH