Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1485 ATGTCCGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGCCAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCCATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGATTCCTATATGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTGCGTTATGATATCCATTATTGGCTTGGTAAAAAGACCAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAGACAGTCGAGTTGGATGCAGCCCTGGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGCCATGAGACTGAAAAGTTCCTTTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGAGTTTCCTCTGGTTTTAAACATGTTGAGGCTGAAGAACATACAATACGGTTGTTTGTATGCAAAGGGAAACATGTGGTACATGTCAAAGAGGTTCCATTTGCTCGATCTTCACTAAACCATGATGATATTTTTATTCTGGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAGTTTATTAAGGATACCTACCATGATGGGAAATGCGAGATAGCTTCCATTGAGGATGGAAAGTTGATGTCTGATTCTGAAACTGGAGAATTTTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGTCAGTGATGACGATAAGTCTGCTGATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAGACAGAACCTGTAGAAACTGATTCTTTGACAAAGGAAATGCTGGAGACAAACAAATGCTATATTATAGATTGTGGATTGGAAGTGTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGCGGAGCTGCAGAAAAGTTAGTAAGTGGCGCTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGACAACTCAAGTAATGTCTGAAGAGGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCCTAAAATCTGAACCTGTAAAAGAAGAACCTCAACCCTACATAGATTGCACAGGAAATTTGCAGGTTTGGCGTGTTAATGGCAAGGATAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTACAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGCATCTTATAGGAACATGGATTGGAAAGGCTAGTGTTGAGGAAGAGAGGGCTTCAGCTCTTTCTCTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTTCCCTGGTTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTGCAAAGCTGTATTGTTTTCAAGGGTGGACTTAGTGATGGATACAAGAATTACATTGCAGAGAAGGAAATTCCAGATGCGACATACAGCGAGGATGGTGTTGCATTATTCCGCATCCAGGGCTTTGGCCCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTATTGTTACATACTTCATAGCGGGTCCACTGTTTTTACTTGGTCTGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTCTTGACAGAATGCTGGATTTGATTAAGCCGGATTTACAAAGCAAATCACATAAGGAAGGCGTAGAATCGGAACTGTTTTGGGATTTGTTGGGCGGAAAATCAGAATACCCCGGTCAAAAGATCGCGAGGGATGAAGAAAGTGACCCTCACCTAGTTTCTTGCGACTTCTCAAAAGGAAATTTAAAGGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACATCTTGGATTGTCACTCTGAAATCTTCGTCTGGCTTGGCCAGCAGGTTGACGCAAAGGGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCGTGAAGCTCCAATATATGTTGTCAAGGAAGGTAACGAGCCACCTTTCTTTACTCGCTTTTTTAAATGGGAGTCTGCAAAATCCACAATGCTGGGAAACTCGTTTCAGAGGAAGCTTGCAATCGTCAAAAGTGGGGGAGCGGCACTTGTACTTAAACATAAACGAAGATCATCCGTATCTTATGGGGGAAGGTCTGGTGGTGCGCCAGATTCTCAGCGTTCCCGCAGCATGTCGGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCACTAGCAGCTACTTTTGAGAACACAAATACTAGGAACCTTTCAACTCCACCTCCAATGGTTAGAAAACTGTACCCAAAATCTGGGGCACAGGATACAGCAAAACCGGCACCTAAACTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACAACCATCAGCTCGAGAAAATTTGATTCCTCGATCCCAAAAAGTGAGTTTAGTTACCGCCATATCAAACCCCGAGATAATTGCCGAGGGGGCTTCTATGAGCAGGAGAATAGAATCCCTTACCATAGAGGAGGATGTGAAAGAGGGTGAAGCTGAAGATGATGAAAGTCTCCCAGTTTACCCACATGATCGCATTAACACAGAATCTACAGATCCTGTAACAGATATTGACGTTACTAAACGAGAGGCTTATTTGTCACCTGCGGAGTTCCAAGAGAAATTAGGGATGGCTAAGACGGAATTTTACAAGTTACCAAAATGGAAACAGAACAAACTCAAGATGGCAGTTCAGTTGTTCTGA 2877 0.4216 MSVSMRDLDPAFKGAGQKAGLEIWRIENFNPVPIPQSSYGKFFTGDSYMILKTTASKSGALRYDIHYWLGKKTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVSSGFKHVEAEEHTIRLFVCKGKHVVHVKEVPFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVVQFIKDTYHDGKCEIASIEDGKLMSDSETGEFWGCFGGFAPLPRKTVSDDDKSADSHPPKLLCVDKGKTEPVETDSLTKEMLETNKCYIIDCGLEVFAWMGRNTSLDERKSASGAAEKLVSGAGRPKSHIIRVIEGFETVMFKSKFDSWPQTTQVMSEEGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGNLQVWRVNGKDKILLPATDQSKFYNGDCYIFQYSYPGEDKEEHLIGTWIGKASVEEERASALSLASKMVESMKFLPSLVRIYEGSEPIQFHAILQSCIVFKGGLSDGYKNYIAEKEIPDATYSEDGVALFRIQGFGPDNMQAIQVEPVASSLNSTYCYILHSGSTVFTWSGGLATSDDQELLDRMLDLIKPDLQSKSHKEGVESELFWDLLGGKSEYPGQKIARDEESDPHLVSCDFSKGNLKVKEIYNFSQDDLMTEDIYILDCHSEIFVWLGQQVDAKGRMQALTIGEKFLEHDFLLEKLSREAPIYVVKEGNEPPFFTRFFKWESAKSTMLGNSFQRKLAIVKSGGAALVLKHKRRSSVSYGGRSGGAPDSQRSRSMSVSPDRVRVRGRSPAFNALAATFENTNTRNLSTPPPMVRKLYPKSGAQDTAKPAPKLSAISHLTSSFEQPSARENLIPRSQKVSLVTAISNPEIIAEGASMSRRIESLTIEEDVKEGEAEDDESLPVYPHDRINTESTDPVTDIDVTKREAYLSPAEFQEKLGMAKTEFYKLPKWKQNKLKMAVQLF* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1485 958 MobiDBLite consensus disorder prediction 752 778 - -
Pvu3g1485 958 MobiDBLite consensus disorder prediction 758 773 - -
Pvu3g1485 958 Gene3D Severin 7 132 IPR029006 -
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 223 346 - -
Pvu3g1485 958 SUPERFAMILY VHP, Villin headpiece domain 884 958 IPR036886 GO:0003779|GO:0007010
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 594 716 - -
Pvu3g1485 958 SMART VILL_6 518 605 IPR007122 GO:0051015
Pvu3g1485 958 SMART VILL_6 622 718 IPR007122 GO:0051015
Pvu3g1485 958 SMART VILL_6 391 488 IPR007122 GO:0051015
Pvu3g1485 958 SMART VILL_6 19 117 IPR007122 GO:0051015
Pvu3g1485 958 SMART VILL_6 137 234 IPR007122 GO:0051015
Pvu3g1485 958 SMART VILL_6 254 344 IPR007122 GO:0051015
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 381 525 - -
Pvu3g1485 958 CDD gelsolin_S4_like 385 484 - -
Pvu3g1485 958 Pfam Gelsolin repeat 28 111 IPR007123 -
Pvu3g1485 958 Pfam Gelsolin repeat 410 481 IPR007123 -
Pvu3g1485 958 Pfam Gelsolin repeat 265 337 IPR007123 -
Pvu3g1485 958 Pfam Gelsolin repeat 637 711 IPR007123 -
Pvu3g1485 958 Pfam Gelsolin repeat 150 216 IPR007123 -
Pvu3g1485 958 CDD gelsolin_S2_like 140 232 - -
Pvu3g1485 958 Gene3D Villin headpiece domain 896 958 IPR036886 GO:0003779|GO:0007010
Pvu3g1485 958 SMART VHP_1 923 958 IPR003128 GO:0003779|GO:0007010
Pvu3g1485 958 Gene3D Severin 379 519 IPR029006 -
Pvu3g1485 958 MobiDBLite consensus disorder prediction 885 909 - -
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 513 612 - -
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Pvu3g1485 958 PANTHER VILLIN 1 958 IPR007122 GO:0051015
Pvu3g1485 958 SUPERFAMILY Actin depolymerizing proteins 129 241 - -
Pvu3g1485 958 CDD gelsolin_S3_like 254 343 - -
Pvu3g1485 958 Gene3D Severin 612 734 IPR029006 -
Pvu3g1485 958 CDD gelsolin_S6_like 620 717 - -
Pvu3g1485 958 CDD gelsolin_S5_like 516 607 - -
Pvu3g1485 958 PANTHER VILLIN-3-LIKE 1 958 - -
Pvu3g1485 958 CDD gelsolin_S1_like 12 124 - -
Pvu3g1485 958 Pfam Villin headpiece domain 923 958 IPR003128 GO:0003779|GO:0007010
Pvu3g1485 958 Gene3D Severin 133 246 IPR029006 -
Pvu3g1485 958 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 410 426 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 435 453 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 468 488 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 531 551 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 591 610 IPR007122 GO:0051015
Pvu3g1485 958 PRINTS Gelsolin family signature 643 665 IPR007122 GO:0051015
Pvu3g1485 958 Gene3D Severin 247 358 IPR029006 -
Pvu3g1485 958 ProSiteProfiles Headpiece (HP) domain profile. 893 958 IPR003128 GO:0003779|GO:0007010
Pvu3g1485 958 Gene3D Severin 520 611 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1485 Pvu-Chr3 33885642 33902276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1485 - - gmx:100807762 1697.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1485 3 33885642 33902276 Pvu3g1485 3 33885642 33902276 ECH
Pvu3g1485 3 33885642 33902276 Pvu9g2165 9 31019073 31021946 PCT
Pvu9g2462 9 35089432 35102558 Pvu3g1485 3 33885642 33902276 PCT