Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1464 ATGGCCACCCTCGACCCAATCCAAAACGGCACCACCAATCCCCTTCTATCGGACAATCCCGACCAAGCTGAACCTCCCTCCACCACCTCCGACGACGACCACACTACCGAGGCCGCTGCCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGCCTCATCGTGCCGGTCCTTAAAGTTGGAAGCATCATTGGCCGCAAGGGGGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCGGTTGGCACGCCCGATCGAATCGTACTAATATCAGGGAAGGAAGAGCCAGAGGCAGCACTTTCTCCTGCTATGGATGCTGTCATAAGGATTTTTAAACGTATCTCAGGGTTGTCTGAAATTGATGGGGAGAATAAAGCAGCAGGGCTTGCATTTTGTTCCGTTCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAACAGGGTTCATTAATTAAATCTATACAAGAGAGTACCAGTGCTTCCGTTAGAGTACTTTCTGGAGACGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGCTGCAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGATTGACCCCAGTGTTCTTCCTTTATTTGAGAAAAGTTACAATGCATCAATCTCCCAAGAGCGACAAGTAGATACTACTTGGGTTGACAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGCGAATGATATTCCTCTTTCATCAAAAAGGGAGTCTCTCTTTGCTGACCGTGAAAGCCATTTGGATTCATTTCTCCCTCCCTCTACAATGTCAATATATGGGCAAGATTCTTCACTTTCTAGTCTTCGTTCTTCAGCACTCAGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATTATTGGTATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCAATACTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATTAAAGGCACCTCATCTCAGGTTCAGACAGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTCACGAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTATTCTCAGCTGGGCAGTTCGTCTTATTCGTCATCTTCCTACAGCGGGTATGGATCTTCTGGTCTAGGAGGCTATAGTACTTTCAGACTTTGA 1308 0.4778 MATLDPIQNGTTNPLLSDNPDQAEPPSTTSDDDHTTEAAAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRIFKRISGLSEIDGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQESTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLIDPSVLPLFEKSYNASISQERQVDTTWVDKPSLHSASQPSIANDIPLSSKRESLFADRESHLDSFLPPSTMSIYGQDSSLSSLRSSALSRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVTSNYSRLDTGLRSSYSQLGSSSYSSSSYSGYGSSGLGGYSTFRL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1464 435 Gene3D K Homology domain, type 1 315 390 IPR036612 GO:0003723
Pvu3g1464 435 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 38 427 - -
Pvu3g1464 435 ProSiteProfiles Type-1 KH domain profile. 141 210 - -
Pvu3g1464 435 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 313 386 IPR036612 GO:0003723
Pvu3g1464 435 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 44 109 IPR036612 GO:0003723
Pvu3g1464 435 Pfam KH domain 53 106 IPR004088 GO:0003723
Pvu3g1464 435 Pfam KH domain 144 210 IPR004088 GO:0003723
Pvu3g1464 435 Pfam KH domain 320 382 IPR004088 GO:0003723
Pvu3g1464 435 ProSiteProfiles Type-1 KH domain profile. 317 380 - -
Pvu3g1464 435 SMART kh_6 140 215 IPR004087 GO:0003676
Pvu3g1464 435 SMART kh_6 49 122 IPR004087 GO:0003676
Pvu3g1464 435 SMART kh_6 316 385 IPR004087 GO:0003676
Pvu3g1464 435 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 38 427 - -
Pvu3g1464 435 CDD PCBP_like_KH 52 121 - -
Pvu3g1464 435 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 219 IPR036612 GO:0003723
Pvu3g1464 435 MobiDBLite consensus disorder prediction 1 41 - -
Pvu3g1464 435 MobiDBLite consensus disorder prediction 1 26 - -
Pvu3g1464 435 CDD PCBP_like_KH 143 211 - -
Pvu3g1464 435 ProSiteProfiles Type-1 KH domain profile. 50 117 - -
Pvu3g1464 435 Gene3D - 51 217 - -
Pvu3g1464 435 CDD KH-I 319 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1464 Pvu-Chr3 33470009 33476063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1464 K21444 - gmx:100807645 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1464 3 33470009 33476063 Pvu3g1464 3 33470009 33476063 ECH
Pvu3g1464 3 33470009 33476063 Pvu9g2439 9 34778537 34787773 PCT