Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1413 ATGGCACTGAATTACCCTTCTTCAACCTACTTCATACTACTAGTAGTAACCATAACCCGTTTGATATACACGGAGGGCAAAACCGAGCAATGGAAAGGTCTGATTCTTCCAGATCTTGACTTTGAAAATATATTCCATAAGCTTCACGATGACCCTGAAACCATTCAAATGGCTTCTAGTGACTATGGTCATATCGTGCATGAACTCCCTGCAGCTGTGTTTCATCCATCTTCCATAGAGGACATAGCCACCTTGATAAAATCCTCATACAACAGCCTTGCCCCTTTTCACATAGCCGCGAGGGGCCAAGGCCACTCCCATCATGGACAAGCCATGGCTCGTGATGGGGTGGTGGTTGACATGGCCACCCTGAGAAAACAAAGAAATGGGGTTTCGATTAGTGTCTCTAAGGACCCTTTGATAGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCCTCACTAGAACATGGACTTGCACCCGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGAACGCTTTCCAACGCTGGAATTAGTGGCCAGTCTTTCCGCTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTTATCACTGGAAAAGGAGAGTTCGTAACCTGCTCTACGCAGAAGAACTTGGAGTTATTCAACGCGGTTCTTGGAGGCTTTGGACAATTTGGAGTCATAGCAAGGGCGAGAATTGCTCTTGAGACAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAATGCATTAGATTTTTTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACATGGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGACCAAACCGAGAAAAATGTGGACAAGGAAATTCATGTGCTGCTCCAAGGGCTGGCCTATATCCCCGGATTTTATTATGAGAAAAATGTCTCATACGTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGTTAAAGCTTCAGTCACAAGGACTGTGGGAGGTTCCTCACCCATGGCTTAATTTGTTTTTACCGAAATCTCAAATCTTGGATTTTAATTCAGGAGTATTCATGGATATAATTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTACCCTATGAATAGAAACAAGTGGGACGATAGGATGTCTGCATCAATACCAGACGAGGATGTCTTCTATACAGTTGGATTTTTGCACTCGAGTGGGTTTGATTCTTGGAAAGCACATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGGGATGCTGGCATTAAGGTTAAGCAATATCTTCCTAACCACAGCACACAGGAAGATTGGACAAATCATTTCGGTACCAAATGGTTGAAATTCTTAGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTATCACCCGGGCAAAAAATCTTCCACAAACAATTACAACCAGCGTTTTAA 1608 0.426 MALNYPSSTYFILLVVTITRLIYTEGKTEQWKGLILPDLDFENIFHKLHDDPETIQMASSDYGHIVHELPAAVFHPSSIEDIATLIKSSYNSLAPFHIAARGQGHSHHGQAMARDGVVVDMATLRKQRNGVSISVSKDPLIGHYADVGGEQLWIDVLHASLEHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSTQKNLELFNAVLGGFGQFGVIARARIALETAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHGILYCLEVAKYYDDQTEKNVDKEIHVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFLPKSQILDFNSGVFMDIILKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDSWKAHDAQNREILEFCRDAGIKVKQYLPNHSTQEDWTNHFGTKWLKFLERKHQFDPRMILSPGQKIFHKQLQPAF* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1413 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
Pvu3g1413 535 Gene3D - 121 250 IPR016169 -
Pvu3g1413 535 Gene3D - 51 527 IPR016167 -
Pvu3g1413 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 527 IPR016164 GO:0003824|GO:0050660
Pvu3g1413 535 PANTHER GULONOLACTONE OXIDASE 11 527 - -
Pvu3g1413 535 Pfam FAD binding domain 70 217 IPR006094 GO:0050660
Pvu3g1413 535 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 527 - -
Pvu3g1413 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Pvu3g1413 535 Gene3D - 251 486 IPR016170 -
Pvu3g1413 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 245 IPR036318 GO:0050660
Pvu3g1413 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 248 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1413 Pvu-Chr3 32803946 32807861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1413 K00279 - gmx:100787676 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1413 3 32803946 32807861 Pvu3g1413 3 32803946 32807861 ECH
Pvu3g1413 3 32803946 32807861 Pvu9g2395 9 34182344 34186263 PCT