Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1373 ATGGCTTCAACTTCAGCACTTTCAATGTCTCTCCCACTAAATCACACCACCCAGAAGAGGGTGGTGCCCACTTCCGAGGCACTGTTCAAGGCACCGTTAACTCTGCCAGCTTCAAAGGGTGTGGCACTGTCCAAACCCAATGGAAGGTTTCAGGTGAGGGCATCCATGAAAGAGAAAGTTGTCACGGGTTTGACTGCAGCTGCTTTGACGGCTTCCATGATGGTTCCCGATGTGGCTGAAGCCGCCGTATCGCCTTCTCTCAAGAATTTCTTGCTCAGCATCGCCGCTGGTGGAGTTGTGGCTGTAGCAATTGTTGGCGCCGTCATTGGGGTTTCCAACTTCGATCCCGTCAAGCGAAGCTGA 363 0.5289 MASTSALSMSLPLNHTTQKRVVPTSEALFKAPLTLPASKGVALSKPNGRFQVRASMKEKVVTGLTAAALTASMMVPDVAEAAVSPSLKNFLLSIAAGGVVAVAIVGAVIGVSNFDPVKRS* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1373 120 Pfam Photosystem II reaction centre X protein (PsbX) 83 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Pvu3g1373 120 Gene3D Single helix bin 82 120 - -
Pvu3g1373 120 PANTHER EXPRESSED PROTEIN 1 120 - -
Pvu3g1373 120 PANTHER OS07G0673550 PROTEIN 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1373 Pvu-Chr3 32323841 32324558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1373 - - vra:106767477 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1373 3 32323841 32324558 Pvu3g1373 3 32323841 32324558 ECH
Pvu3g1373 3 32323841 32324558 Pvu9g2363 9 33773101 33773947 PCT