Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1224 ATGACGCTGATTGCACTCTTCCTCACTGCCACCAAGCTCGCCGGAGCTCTCTTTACTCTCACCGTCGCCGCCAACGCCATCTCCTACTCCCGCTTCCGCAAGAACAACCTTCGCCGATTCCGCTCCCCTATCGACGAATCGTCCGAAACTCTCGCCGACTTCAACTTCGCCGAAGAGGAGTTTTTCTTTGGTTTGGCTACAGCACCGGCTCATGTCGAGGACAGGCTTGATGATGCTTGGATCCGGTTTGCTGAGGAAAAGAGTGACGACTCCAACGGGAGGCAGACAGTGGATGCTGTGATGGCTTCTGCTTCTGGCGATGGTGGGTCCCAGCGGGCCGCGACGTCTCCGCGGGGCAGGAAGCCTATTAAGGTGGCTATGGAGGCCATGATTAGGGGATTTGAGAAGTACTTGGAAGTGGAAGGAAAAGAAGGGGAAGTAGAACCTCGTCCTAATGTAACTGCTTGGCATAATGTTCCACGCCCGGAGGAGAGGTTAAGATTTTGGTCTGATCCTGAAACAGAAATAAAATTGGCCAAGGATACCGGTGTTACTGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAACAGCCTTAATGAATCTGTTAACTATGCTGCGTTGGAACGGTATAAGTGGATTATCAATAAGGTTCGATCATATGGAATGAAGGTGATGCTTACTCTTTTCCATCACTCACTTCCACCCTGGGCTGGTGAGTATGGCGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTATCAGATTCGGTAGACTATTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTACTGTGCTGGAGCTTGGCCTGGAGGCCATCCTGATATGCTTGAGGTCGCAACTTCAGCACTTCCAACCGGTGTTTTTCAACAGGCCATGCATTGGATGTCTGTTGCACACTTAAAGGCATATGACTACATCCACGGACTAAGTAACCCATTAAATCCAATAGTTGGTGTAGCACATCATGTGTCATTTATGCGACCCTTCGGTTTGTATGACGTCGCTGCTGTTTCTCTGGCTAATTCATTGACTCTCTTCCCGTACATTGATGGAATATCTGAAAAGCTGGACTATATAGGCATAAACTACTATGGCCAGGAAGTGGTTTCCGGTGCAGGCCTGAAGCTGGTGGAAAATGATGAGTATAGTGAATCTGGTCGCGGGGTATACCCTGATGGCTTATACCGCATGTTGCTTCAGTTCCATGAAAGATACAAACATCTAAAAATTCCCTTCATCATCACTGAAAATGGTGTTTCGGATGAGACAGATTTGATCCGCCGGCCATATTTCTTGGAGCATTTGCTTGCTGTTTATGCTGCTATAAACATGGGTGTACGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCCGATGGATATGGTCCCAAGTTTGGACTTGTTGCGGTTGACAGGGCAAATAATCTTGCACGGATCCCTCGCCCCTCTTACCATCTATTTTCTAAAATTGTGAATACCGGCAAAGTCACACGTGAAGATCGTGAAAGAGCATGGGATGAACTCCAAAGAGCTGCCAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGAATAAACACCGTCTAATGTATGCAGGTGGACTTGATGAACCTGTACAGCGACCTTATATAGATAGAGATTGGCGGTTCGGTCATTACCAGATGGAAGGACTCCAGGATCACTTGAGCCGCTTCTCAAGAGTCATTATTCGACCCTTCTCCCCCAAAAGGAAAACAAAATCTCAGGAGAAGAATCCCAAATTAATTCTTCAGCCTCTTGAAACTTAA 1887 0.4695 MTLIALFLTATKLAGALFTLTVAANAISYSRFRKNNLRRFRSPIDESSETLADFNFAEEEFFFGLATAPAHVEDRLDDAWIRFAEEKSDDSNGRQTVDAVMASASGDGGSQRAATSPRGRKPIKVAMEAMIRGFEKYLEVEGKEGEVEPRPNVTAWHNVPRPEERLRFWSDPETEIKLAKDTGVTVFRMGIDWTRIMPVEPVNSLNESVNYAALERYKWIINKVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDSVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEVATSALPTGVFQQAMHWMSVAHLKAYDYIHGLSNPLNPIVGVAHHVSFMRPFGLYDVAAVSLANSLTLFPYIDGISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLKIPFIITENGVSDETDLIRRPYFLEHLLAVYAAINMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTREDRERAWDELQRAAKEKKTRPFYRAVNKHRLMYAGGLDEPVQRPYIDRDWRFGHYQMEGLQDHLSRFSRVIIRPFSPKRKTKSQEKNPKLILQPLET* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1224 628 MobiDBLite consensus disorder prediction 608 628 - -
Pvu3g1224 628 ProSitePatterns Glycosyl hydrolases family 1 active site. 440 448 IPR018120 -
Pvu3g1224 628 Pfam Glycosyl hydrolase family 1 173 358 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 Pfam Glycosyl hydrolase family 1 380 526 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PANTHER GALACTOLIPID GALACTOSYLTRANSFERASE SFR2, CHLOROPLASTIC 3 585 - -
Pvu3g1224 628 Gene3D Glycosidases 138 538 - -
Pvu3g1224 628 SUPERFAMILY (Trans)glycosidases 155 532 IPR017853 -
Pvu3g1224 628 PRINTS Glycosyl hydrolase family 1 signature 383 397 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PRINTS Glycosyl hydrolase family 1 signature 440 448 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PRINTS Glycosyl hydrolase family 1 signature 452 463 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PRINTS Glycosyl hydrolase family 1 signature 473 490 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PRINTS Glycosyl hydrolase family 1 signature 497 509 IPR001360 GO:0004553|GO:0005975
Pvu3g1224 628 PANTHER GLYCOSYL HYDROLASE 3 585 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1224 Pvu-Chr3 29442080 29447292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1224 4 603 Glycoside Hydrolase AT3G06510 63.495 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1224 K21362 - gmx:100792401 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1224 3 29442080 29447292 Pvu3g1224 3 29442080 29447292 ECH