Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1201 ATGTGCCCTTCTGGCCGCATTCTCACCACCCACGCCGCGGCCTCCGACTTCCGCCCCGCATTCGAAGTCCTCGACGCCGACCGCGACGGCAAAATCAGCCGCGACGACCTCCGCGCCTTCTACGCCGGTGTGCATGGCGGAGTCGGCGGCGGAGATGAGTTGATCGGGGCAATGATGACGGTGGCGGACACGAACAAGGACGGGTTCGTGGAGTACGAGGAGTTTGAGCGCGTGGTCAACTTCTTTCCCGCAACCGACGAAGACATCAACGCCATGATACTCTTCGGTGGCGGCGACAAAAGTGGCGGCGTGACATTAGATGGTTTGCTTCGTATATTGGCGCTTGATTCTGCCTACCCTAATTAA 366 0.5956 MCPSGRILTTHAAASDFRPAFEVLDADRDGKISRDDLRAFYAGVHGGVGGGDELIGAMMTVADTNKDGFVEYEEFERVVNFFPATDEDINAMILFGGGDKSGGVTLDGLLRILALDSAYPN* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1201 121 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 82 117 - -
Pvu3g1201 121 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 80 - -
Pvu3g1201 121 Pfam EF-hand domain pair 17 78 IPR002048 GO:0005509
Pvu3g1201 121 Gene3D - 49 115 - -
Pvu3g1201 121 Gene3D - 8 43 - -
Pvu3g1201 121 SMART efh_1 16 44 IPR002048 GO:0005509
Pvu3g1201 121 SMART efh_1 54 82 IPR002048 GO:0005509
Pvu3g1201 121 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Pvu3g1201 121 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Pvu3g1201 121 PANTHER CALCIUM BINDING PROTEIN 1 80 - -
Pvu3g1201 121 PANTHER CALCIUM BINDING PROTEIN 82 117 - -
Pvu3g1201 121 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Pvu3g1201 121 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Pvu3g1201 121 SUPERFAMILY EF-hand 16 116 IPR011992 -
Pvu3g1201 121 CDD EFh 16 75 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1201 Pvu-Chr3 28902866 28903347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1201 1 113 EF-hand Containing Proteins AT5G49480 41.139 2.23e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1201 K02183 - gmx:100527230 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1201 3 28902866 28903347 Pvu3g1201 3 28902866 28903347 ECH