Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1196 ATGAAGGAGTTCAAGCGCTTTGACGTTGTAATGGACGACACAGACCATCGGTTTCGAGACTCAAACAATGGGAAATACTTCAACGATTCAAGGAGTTCACTTTACAAAACCATCATGAGAGAGTGGAAGATTCTGGAGAAGAACTTGCCGGAATCAATCTACGTGAGGGTGTACGAGCGACGCATTGATCTGATGAGGGCTGTGATCGTAGGCGCCCAGGGTACACCGTACCACGATGGTCTCTTCTTCTTCGACATCGTGTTTCCTTTCGATTTCCCCGACCACCCTCCCAAGCTGCATTACCACTCTTTCGGGTACAGACTGAACCCTAATCTGTACAGCAACGGAACGGTGTGCTTGAGCCTGCTGAACACGTGGCACGGGAAAATGCCGGAGATGTGGGACCCATCCAAGTCGACGATGCTGCAAGTGTTGCACTCAATCCAAGCGTTGGTTCTGAACGAGAAACCGTTTTTCAACGAGCCTGGTGTGGGAGGTTTTGCGAATTTCAGCATGAACTTGGAGAAGAAGTCATGCGTGTACAACGAGAAAGCGTATTTTAGCACTTGCAAAACCACCCACCAACTGCTTCGGAGGCCACCTCGGAACTTCGAAGAGTTCGTGAGTTGCCACTTTCGCCAGCGAGCGGCTCGCATAATCGAGGCGAACAGGCAGTACGTGAGTGGGCGCGTGAGGATCGGGTATTACTCGTGCGAGTCGGCTCCGTCTTCTTCTTCGGGGGTGCACGTTTCCCAGGAGTTCAAGCACTTGATGAAGGACTTTTCCCCTGGGTTTGTTTACGCGCTTCGACGGAACTGTTCTCCTTCGAACGGTGTTGGTTTCAGGTGTACGACGGCGTACATAGTTGTGAGATGGAATTACGCCCATGACGATACAATCAAGAAATCTGAAAGCAAAGGCGGCGGATTCTTCAAAACGGTTATGGATAAGATCAAAAAGTCTTTTGGATGGAAGAATAATATTGGGAAATTTAATCAATGA 1002 0.494 MKEFKRFDVVMDDTDHRFRDSNNGKYFNDSRSSLYKTIMREWKILEKNLPESIYVRVYERRIDLMRAVIVGAQGTPYHDGLFFFDIVFPFDFPDHPPKLHYHSFGYRLNPNLYSNGTVCLSLLNTWHGKMPEMWDPSKSTMLQVLHSIQALVLNEKPFFNEPGVGGFANFSMNLEKKSCVYNEKAYFSTCKTTHQLLRRPPRNFEEFVSCHFRQRAARIIEANRQYVSGRVRIGYYSCESAPSSSSGVHVSQEFKHLMKDFSPGFVYALRRNCSPSNGVGFRCTTAYIVVRWNYAHDDTIKKSESKGGGFFKTVMDKIKKSFGWKNNIGKFNQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1196 333 Gene3D Ubiquitin Conjugating Enzyme 1 265 IPR016135 -
Pvu3g1196 333 SUPERFAMILY UBC-like 27 201 IPR016135 -
Pvu3g1196 333 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 33 194 IPR000608 -
Pvu3g1196 333 CDD UBCc 35 162 IPR000608 -
Pvu3g1196 333 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 280 - -
Pvu3g1196 333 Pfam Ubiquitin-conjugating enzyme 38 157 IPR000608 -
Pvu3g1196 333 SMART ubc_7 36 194 - -
Pvu3g1196 333 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 2 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1196 Pvu-Chr3 28783424 28784425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1196 4 268 Miscellaneous Gene Families AT2G33770 47.547 1.09e-70 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1196 K10581 - gmx:100791343 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1196 3 28783424 28784425 Pvu3g1196 3 28783424 28784425 ECH