Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1186 TTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCTGATATTGAAGCTGCTTGTGCTGCACACCCTACTGCTGATGTGTTCATCAATTTTGCATCGTTTAGAAGTGCGGCTGCATCATCCATGACTGCTTTAAAGCAGCCGACAATTAGAGTTATTGCTATTATTGCTGAAGGTGTGCCTGAGTCAGACACTAAACAATTGATAGCGTATGCTCGGGCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTCGGAGGAATTCAAGCTGGTGGTTTTAAGATAGGTGACACTGCTGGAACAATTGACAACATAATTCAGTGCAAGCTCTACCGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAGTTATACAACAGTATTGCCCGTGTGACTGATGGAATTTATGAAGGCATTGCCATTGGCGGAGATGTTTTCCCAGGTTCCACACTCTCTGACCATGTTTTGCGGTTTAGCAACATACCACAGGTTAAAATGATAGTAGTACTTGGGGAACTTGGTGGGCGAGATGAGTATTCTCTGGTGGAAGCCCTAAAACAGGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTTAGCGGAACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCAAAAAGTGGCGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAAGAAGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGTTGCAATAAAGGAAACATTTGATAAATTGGTTGAAGAAGGGAATATCACACCCATTAAAGAGTTTACTCCTCCACCAATCCCCGAAGACCTAAACATTGCAATTAAGAGTGGAAAAGTACGTTCTCCAACTCATATTATTTCCACCATCTCTGATGACAGAGGTGAGGAACCCTGCTATGCTGGGGTACCAATGTCTACCATTATTGAAAATGGTTATGGTGTGGGGGATGTTATCTCTCTTTTGTGGTTCAAACGTAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGTATCATGCTGTGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAAGATCTTGTCTCCTGTCTTGTATCGGGCTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCTTATGACAGGAGTCTTACACCTTATGAATTTGTTGAAAGTATGAAGAAGAAGGGCATCCGTGTTCCTGGAATAGGGCACAGAATCAAGAATAGGGATAACAAGGATAAGAGAGTCGAGCTGCTACAAAAGTTTGCACGCACACATTTTCCGTCTGTGAAATACATGGAGTATGCTGTTGAAGTTGAAAATTACACCCTCACCAAGGCAAATAACCTAGTTCTAAACGTAGATGGTGCAATTGGGTCACTTTTCTTGGATCTTCTAGCTGGTAGCGGAATGTTCACTAAACAAGAGGTTGACGAAATTGTGGGGATTGGCTATCTGAATGGGCTTTTTGTTTTGGCACGCTCCATTGGTCTGATCGGGCATACCTTTGACCAAAAGAGATTGAAACAACCACTCTATCGTCACCCATGGGAAGATGTTCTGTACACAAAATGA 1662 0.4368 FGQEEIAIPVHADIEAACAAHPTADVFINFASFRSAAASSMTALKQPTIRVIAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGGFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFSNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSYEAFEVAIKETFDKLVEEGNITPIKEFTPPPIPEDLNIAIKSGKVRSPTHIISTISDDRGEEPCYAGVPMSTIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEVDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1186 553 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 113 138 IPR017866 -
Pvu3g1186 553 Gene3D - 83 268 IPR016102 -
Pvu3g1186 553 PANTHER ATP-CITRATE SYNTHASE 1 553 - -
Pvu3g1186 553 SUPERFAMILY Citrate synthase 79 551 IPR036969 GO:0046912
Pvu3g1186 553 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 81 IPR036291 -
Pvu3g1186 553 Gene3D - 1 82 - -
Pvu3g1186 553 Gene3D - 395 492 IPR016143 -
Pvu3g1186 553 CDD CCL_ACL-C 314 551 - -
Pvu3g1186 553 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 553 - -
Pvu3g1186 553 Pfam CoA-ligase 119 243 IPR005811 GO:0003824
Pvu3g1186 553 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 204 220 IPR017440 -
Pvu3g1186 553 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 119 148 IPR033847 -
Pvu3g1186 553 Pfam Citrate synthase, C-terminal domain 344 543 IPR002020 GO:0046912
Pvu3g1186 553 PRINTS Succinyl-CoA synthase signature 41 58 - -
Pvu3g1186 553 PRINTS Succinyl-CoA synthase signature 144 162 - -
Pvu3g1186 553 PRINTS Succinyl-CoA synthase signature 175 188 - -
Pvu3g1186 553 PRINTS Succinyl-CoA synthase signature 211 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1186 Pvu-Chr3 28599004 28603037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1186 1 553 Acyl Lipid Metabolism Gene Families AT3G06650 91.863 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1186 K01648 - gmx:100801407 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1186 3 28599004 28603037 Pvu3g1186 3 28599004 28603037 ECH
Pvu3g1186 3 28599004 28603037 Pvu6g1236 6 23295917 23303038 PCT