Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1184 ATGAACGCCCTCCCTTCCTCTTCCTCTTCCACTTTCGCTTTCGTAACTCAGTCCAAGAACATCTTCAAGCTCACACATAAAGTACCCATTTTGCCCCTACACTCACATGCTCCGTGTTGCTCTCTCAGTGACTCGTCCTCCTCGTATACCACGGTGCTGGACAAAAGTGCCCTTTCATCGGAACAGAATTCAAGCAATGCAGTTTCACCCGAAGACTCGGGCTCCGAGGAAGTCCTTGTGGTTCGCCGGCCGGTGACAGATTTTTCCAGCCAAGAGGAGGAAGAGGAGGAGAATGAGGCGGAAAACGGTGGTGACGCGAAGGCTTCGGCGATCGACGCGGGGCTGGCGAGATTCGCGAAGAAGATGCCCATGTTTGAACCTGCGAGGATGGAATCGAAAGAGAGACCCCTCACAGTGAATTTGGACTTGGCGTTATACAGGGCAAAACTTATAGCTAGAAGAAGCTTTCAATATGAAGAAGCAGAGGCCTTGCTGCAAAAGTGTATAAGCTTTTGGCCAGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCGAAAACAGGTGCAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTACTCGGTAAAGGTCTTCAATATGGTGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAAAAGATATCAGCAGGCTCGCTATTTATTCAATCAGGCCATAAAGTGTAATCCTAATAGCTGTGCTAGTTGGCTTAGTTGGGCACAAATGGAGGTGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACATGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCAAACCTTGGCAACATTGACAAGGGAAGAAAACTTTTAATGATAGGCCACACTCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCACGGATTTTGTTCAGGAGAGCGTCAGAATTGAATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACATGAATAAAGCCAGAGAATTCTACCAAAAAACACTATCAATTGATCAGAACAGTGAAACTGCTGCCAGATGTCTTCAGGCTTGGGGTGTTCTGGAACAGAGGGTTGGCAATCTTTCAGCTGCACGTAGGTTATTTAAATCCTCGCTGAATATAAATTCTCAGAGTTACGTCACATGGATGACTTGGGCATCAATGGAGGAAGAACAAGGAAACTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGAACAGAAGTTGTAGATGATGCTACATGGGTTATGGGATTCTTAGATATTTTAGACCCGGCCATTGACAGTTTAAAGACGCTCCTCAAACTCAGCCCAAATTCCTACAACATGCCGTTTAATTCTTTGAGAAATACTGCGGGAACAAATAAAAACAGAGGCGATTTTTCCAGTGACGACGACAATGATGATGAGGATGATGCAGATGGTGAAAGTGACTTCGATTTAGATGCTTTCATTATGAAAAGACTATCCTTAGATTCCTCCAATCTGGAAGTTCAGTTGGAAGCACCCAAAATTTCTTCTGACAAGAGAATTCCATCTGGTAGAAGGATATGGCGACCAAATAACAGAATTGCTAAACTCCAAGTCCAAAGAAATGTTGTTTAG 1935 0.447 MNALPSSSSSTFAFVTQSKNIFKLTHKVPILPLHSHAPCCSLSDSSSSYTTVLDKSALSSEQNSSNAVSPEDSGSEEVLVVRRPVTDFSSQEEEEEENEAENGGDAKASAIDAGLARFAKKMPMFEPARMESKERPLTVNLDLALYRAKLIARRSFQYEEAEALLQKCISFWPEDGRPYVVLGKILSKQSKTGAAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLGKGLQYGGQNEYIYQTLALLEARAKRYQQARYLFNQAIKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVHASPKNRFAWHVWGVFEANLGNIDKGRKLLMIGHTLNPRDAVLLQSLALLEYQHSTANLARILFRRASELNPRHQPVWFAWGWMEWKEGNMNKAREFYQKTLSIDQNSETAARCLQAWGVLEQRVGNLSAARRLFKSSLNINSQSYVTWMTWASMEEEQGNSVRAEEIRNLYFQQRTEVVDDATWVMGFLDILDPAIDSLKTLLKLSPNSYNMPFNSLRNTAGTNKNRGDFSSDDDNDDEDDADGESDFDLDAFIMKRLSLDSSNLEVQLEAPKISSDKRIPSGRRIWRPNNRIAKLQVQRNVV* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1184 644 Pfam Tetratricopeptide repeat 220 268 - -
Pvu3g1184 644 Pfam Tetratricopeptide repeat 285 345 - -
Pvu3g1184 644 SMART hat_new_1 293 325 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 429 464 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 395 427 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 327 359 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 466 498 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 259 291 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 225 257 IPR003107 GO:0006396
Pvu3g1184 644 SMART hat_new_1 190 223 IPR003107 GO:0006396
Pvu3g1184 644 Pfam Tetratricopeptide repeat 417 447 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 381 414 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 279 312 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 245 278 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 211 244 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 452 485 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 142 175 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 176 209 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 415 448 IPR019734 GO:0005515
Pvu3g1184 644 SMART tpr_5 313 346 IPR019734 GO:0005515
Pvu3g1184 644 MobiDBLite consensus disorder prediction 86 106 - -
Pvu3g1184 644 SUPERFAMILY TPR-like 349 549 IPR011990 GO:0005515
Pvu3g1184 644 Gene3D Tetratricopeptide repeat domain 384 533 IPR011990 GO:0005515
Pvu3g1184 644 Gene3D Tetratricopeptide repeat domain 93 383 IPR011990 GO:0005515
Pvu3g1184 644 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Pvu3g1184 644 SUPERFAMILY TPR-like 149 391 IPR011990 GO:0005515
Pvu3g1184 644 MobiDBLite consensus disorder prediction 555 587 - -
Pvu3g1184 644 ProSiteProfiles TPR repeat profile. 279 312 IPR019734 GO:0005515
Pvu3g1184 644 ProSiteProfiles TPR repeat profile. 415 448 IPR019734 GO:0005515
Pvu3g1184 644 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 46 631 IPR044624 GO:0003729|GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1184 - - gmx:100819232 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1184 3 28555015 28559491 Pvu3g1184 3 28555015 28559491 ECH