Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1169 ATGATGAAGGTTGAAGTTGAACCTTTTTCTTCTTCCCTGAATTTGGATGATTGTAAGATGAGTACACTGAGATTTTGTCGCAGATGCAACAATGTTCTGTACCCTACAGAGGACAAGGAGAACAAGGTTCTTCTCCACGCTTGCCGCTACTGCAATCATGAGGAGATTGCAGATAATAATGTTGTCTATAGAAATAAGATACATCATTCTGTTCAAAGGCGCACTCGAGAGCTGGAAAATGTAGCTGCAGATCCAACACTCCCTCGCACCAAGTCTGTTCGCTGCTCTCAATGCAACCATGGAGAGGCTGTTTTTTTCAAGGCAACGGCCAAAGGGGAAGAAGGCTCGGCACTCAATTTTGTTTGCTGCAACCCAACTTGTGGCAACCGTTGGAGAGACTAG 402 0.4502 MMKVEVEPFSSSLNLDDCKMSTLRFCRRCNNVLYPTEDKENKVLLHACRYCNHEEIADNNVVYRNKIHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFKATAKGEEGSALNFVCCNPTCGNRWRD* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1169 133 PANTHER DNA-DIRECTED RNA POLYMERASE 20 133 IPR012164 GO:0006351
Pvu3g1169 133 SUPERFAMILY Zinc beta-ribbon 74 133 - -
Pvu3g1169 133 Pfam Transcription factor S-II (TFIIS) 94 132 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu3g1169 133 Gene3D - 66 133 - -
Pvu3g1169 133 SUPERFAMILY Zinc beta-ribbon 20 67 - -
Pvu3g1169 133 SMART rpol9cneu 24 77 IPR001529 GO:0006351
Pvu3g1169 133 Gene3D - 20 65 - -
Pvu3g1169 133 ProSiteProfiles Zinc finger TFIIS-type profile. 91 132 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pvu3g1169 133 CDD Zn-ribbon_RPB9 83 132 IPR034012 GO:0006379
Pvu3g1169 133 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 20 133 - -
Pvu3g1169 133 Pfam RNA polymerases M/15 Kd subunit 23 55 IPR001529 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1169 Pvu-Chr3 28279694 28283953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1169 K03017 - gmx:100806190 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1169 3 28279694 28283953 Pvu3g1169 3 28279694 28283953 ECH
Pvu3g1169 3 28279694 28283953 Pvu9g2645 9 36901413 36903915 PCT