Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1153 ATGACCATCGACTTAGATTCCATCGCTCGCAAAGTCGACGTTGATAATCGCATTCCCCTCCGCTATTACTATAGGATTGCTGATAACCTCCTCAAGCAGGCTAGTATCTACAGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCACCGAGATTATCATGCTTCGCTGCCCAATGAAAGAGCAACTTATAAGAAGAGATCACGAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGTCGGGTGGACAAATTGAAAGACTTGCATGTAAAAGCTCCATTGCCTGAGGAAAATGGCTTCAATATGGCTTTGCAGAGTTCAGTGAATTCATCTTTGGAGTGGCCAGTTGTCAATAAAAGTAATAACTTGAATATGGATTTTAAACAGCTTGCTGGATTCGGTTCACACTCTTCATGGAATTATAATAATATGTCACCATCAGATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCTGCTCCAAATAAGGATACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCTGTATGACATTGTGGCAATTAAAGATGGTGATCAAGGACCAGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGTTGCATCCTTCTGTTGAGTCTGGTTCTTCTGTTGTAACTGAATCAAGGGAGGATCCCTTCTTACAATCGCTCAACATCAAGCAACCTTTGCCACCTCCTGTTCTTGCACAGGTGCACCCAGAATGTGCCCATATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCTGCTAAATCTTCTCATGATTCTGAACATGGTCCAACGACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCACAGAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCTTGAAAAAAAGGGTATTCCATATCACGACACTTATAATCCCAAAGCAGGAATCAACCTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACATCCATCACAAACTTGTTTCATGTCTTCTGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTACTAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTTTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAATCTTCAGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAACGCTAACTTGAAGTTCGATGTCGTTGACCTTCGAGAGCGATGA 1539 0.4165 MTIDLDSIARKVDVDNRIPLRYYYRIADNLLKQASIYREENNVVDLYIILLRFLSLVSETIPYHRDYHASLPNERATYKKRSRAVLDELESLKPEFKRRVDKLKDLHVKAPLPEENGFNMALQSSVNSSLEWPVVNKSNNLNMDFKQLAGFGSHSSWNYNNMSPSDSRPIDKQFQKLSLSLPAPNKDTLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSDLTHAKDSSLNQAGLYDIVAIKDGDQGPVTSTMDSVLSLDDGRWLHPSVESGSSVVTESREDPFLQSLNIKQPLPPPVLAQVHPECAHIPPSKVADPRPGPAKSSHDSEHGPTTYQHLHIPVKMMEDFLRLASQNTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCQQRGFHPHEESSDGSPIYEHCSHVYMNANLKFDVVDLRER* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1153 512 PANTHER AMSH-LIKE PROTEASE 3 510 - -
Pvu3g1153 512 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Pvu3g1153 512 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pvu3g1153 512 MobiDBLite consensus disorder prediction 306 332 - -
Pvu3g1153 512 SUPERFAMILY JAB1/MPN domain 335 466 - -
Pvu3g1153 512 SUPERFAMILY USP8 N-terminal domain-like 4 104 - -
Pvu3g1153 512 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pvu3g1153 512 Gene3D Cytidine Deaminase, domain 2 319 512 - -
Pvu3g1153 512 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 510 - -
Pvu3g1153 512 Gene3D - 2 119 - -
Pvu3g1153 512 CDD MPN_AMSH_like 333 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Pvu3g1153 512 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Pvu3g1153 512 Coils Coil 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1153 Pvu-Chr3 27889588 27897552 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1153 K11866 - gmx:100812784 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1153 3 27889588 27897552 Pvu3g1153 3 27889588 27897552 ECH