Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0983 ATGAGGTCCTCTTCTTCGGACAGGATCAACATCGCTGCCAGTGCTCAGAAACTCGATGTCGATAACCGAATCGCTCTTCGATTCTACTATCGCATCGCCGATAACATCCTCCGACAGGCTGATATCTTCCGTGCTGAGAAGAATATTATTGACCTTTATGTCATGCTTTTAAGATTTTCTAGTTTGGTGTCTGAGACAATACCACGTCACCGAGATTATAGATCATCTCCACAAAGGCAGAAAGAATCATTGAAAAAGAAATTGTTAATTTCTTTGAATGAACTGGAGAAATTGAAACCAGTGGTCCAACAGAAGATCAACGAGCTTAACAACAATCTCCCATACCAACAAAATGGGCATGGAAAATTTAATTCAAATAATTCACTGGATTTTTCTCCCGTCAAAAAGCTAACATCAGCCAGTTATGGCCAAATAAAGGCAGCCAGACCTACTATTAATGGGGAGCTTCTTTACCAAGGATCTAGGACCCAACAATTCTCTTATGTCAGGCCTGTGGAAGAGCATGTACGAAGACTATCTATAACTCTTCCACCTCCAAAGGAGGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGTTAAAGGGGCAGTGGAGACCACCTTCCACTGATAAATGGATCAGGTATCCAAACAACATTGATCTGTCGCCTATTGAATTACCAAGCCTACAACATTCCTTGGAACATGAATCTGTGAGTAAGAAAGATAATAGCATTGCAGAACACTATAAGTCAGATTTAGATTCACTTCTTACCCAAAGTGAGGACTGCCAGCCCCAGCCCCAGCCTCAACTTCAGCATGATCAGGAACCTCCTTCTCTTATTTCTTTTGAAACAACAGAAACCACTCCTAAAGTAGAGGTTGTTATCAGGCAGCCTTCTCCTCCACCTGTACTTGCTGAGGTACAAGATTTGGTCTCTGCAGTGTCACCTTGTGTTCATGAGGCAGGATGTAAGGCAGAGATTTCATCAACAGATAGTTGTGTTCATGCGGAGGCTCCTCTGCAACTGCACATTTCAACTTCTTTGATGGAGAGTTTTATGAAGCTTGCCAAGTCAAATACAAAAAAAAATTTAGAGACTTGTGGTGTCCTTGCCGGTTTGCTTAAAAACAGGAAATTTTATATCACTGCCCTTATAATCCCAAAGCAAGAGTCAACATCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAGGATAAACGATCTCTTTTTCCCCTTGGGTGGATCCATACACATCCTACACAATCTTGTTTCATGTCGTCAATTGATCTGCACACCCACTACTCCTATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCGCCGAAAGATAGTACAAGAAACCATGGCATTTTTCGGTTGACCAGCCCTGGTGGAATGTCTGTGATTAAACAATGTGATCAGCGTGGCTTTCATCCACACAATCCGCCTCCAGAAGGTGGTCCTATTTACCAGACATGTACAGATGTATACATGAACCCAGATTTAAATTTTGATGTCATTGATCTTCGATAA 1560 0.4173 MRSSSSDRINIAASAQKLDVDNRIALRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVSETIPRHRDYRSSPQRQKESLKKKLLISLNELEKLKPVVQQKINELNNNLPYQQNGHGKFNSNNSLDFSPVKKLTSASYGQIKAARPTINGELLYQGSRTQQFSYVRPVEEHVRRLSITLPPPKEETLSRHSILGPNGLKGQWRPPSTDKWIRYPNNIDLSPIELPSLQHSLEHESVSKKDNSIAEHYKSDLDSLLTQSEDCQPQPQPQLQHDQEPPSLISFETTETTPKVEVVIRQPSPPPVLAEVQDLVSAVSPCVHEAGCKAEISSTDSCVHAEAPLQLHISTSLMESFMKLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPKDSTRNHGIFRLTSPGGMSVIKQCDQRGFHPHNPPPEGGPIYQTCTDVYMNPDLNFDVIDLR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0983 519 Gene3D Cytidine Deaminase, domain 2 327 519 - -
Pvu3g0983 519 ProSiteProfiles MPN domain profile. 345 475 IPR037518 -
Pvu3g0983 519 CDD MPN_AMSH_like 344 519 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Pvu3g0983 519 MobiDBLite consensus disorder prediction 186 210 - -
Pvu3g0983 519 SUPERFAMILY JAB1/MPN domain 344 475 - -
Pvu3g0983 519 Pfam USP8 dimerisation domain 11 105 IPR015063 -
Pvu3g0983 519 SMART pad1_6 344 472 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pvu3g0983 519 Coils Coil 92 112 - -
Pvu3g0983 519 PANTHER AMSH-LIKE PROTEASE 1 519 - -
Pvu3g0983 519 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 519 - -
Pvu3g0983 519 Gene3D - 4 127 - -
Pvu3g0983 519 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 342 448 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0983 Pvu-Chr3 19479275 19485340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0983 K11866 - gmx:100804754 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0983 3 19479275 19485340 Pvu3g0983 3 19479275 19485340 ECH