Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0707 ATGTCGACTCCGGCGAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATATTTGGACCAGATGACACCCCTTGGGATGGAGTTTATGCGGATGGAAGTATATGCTTGGACATTTTGCAAAATCAGTGGAGTCCGATCTATGATGTAGCTGCAATTCTTACCTCAATCCAGTCATTGCTGTGTGATCCAAATCCTAATTCTCCTGCAAATTCTGAAGCTGCTCGGATGTTCAGTGAGAACAAGCGTGAGTACAACAGAAGAGTTCGTGAGATTGTTGAGCAGAGTTGGACTGCTGATTAA 369 0.4417 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0707 122 Gene3D Ubiquitin Conjugating Enzyme 1 51 IPR016135 -
Pvu3g0707 122 CDD UBCc 7 115 IPR000608 -
Pvu3g0707 122 Gene3D Ubiquitin Conjugating Enzyme 52 122 IPR016135 -
Pvu3g0707 122 SUPERFAMILY UBC-like 1 120 IPR016135 -
Pvu3g0707 122 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 120 IPR000608 -
Pvu3g0707 122 SMART ubc_7 7 120 - -
Pvu3g0707 122 Pfam Ubiquitin-conjugating enzyme 51 114 IPR000608 -
Pvu3g0707 122 Pfam Ubiquitin-conjugating enzyme 8 50 IPR000608 -
Pvu3g0707 122 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 51 122 - -
Pvu3g0707 122 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 50 - -
Pvu3g0707 122 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 50 - -
Pvu3g0707 122 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 51 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0707 Pvu-Chr3 10086337 10092136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0707 7 90 Miscellaneous Gene Families AT1G17280 24.348 2.90e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0707 K10573 - bvg:104897962 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0707 3 10086337 10092136 Pvu3g0707 3 10086337 10092136 ECH