Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0691 ATGGCTGATCCTCAGAAAACTGCTCTTGGGGAGAGAGATATCGAGCAGGCAATTGCATTTCTTAAGAAAGGCTCATATCTTCTAAAGTACGGACGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGGCTTTCCAATGATGAGTCTATACTCTTATGGTACTCTGACAAGGAAGAGAAACAGCTTAAACTCAGTACCGTTTCAAGGATCATTCCAGGGCAGCGGACTGCAACATTTCAGCGGTATCCACGACCTGAGAAGGAATATCAATCATTTTCTCTTATATACAGCGATAGGTCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGCGAACAATCGCAAGTGGTTTGAGTCAAGAACTGATGACAGTCACTGTTCTGATAGTCCAAAATCTAGCACACGAAGATCCACTCCATCAAATACACCATTTTCTGACCCTGGAGATGCTGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTCCAATGCAGCAAGCAAGAGTACCAGTCAAGCTGAATCTATTGCAAACTCCTCCTTGTCCTCTGGGTGTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAAGTGATGTTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGAGGTGTACATAGAGTTGGAGCCTTGTCTAGTATGGATGCATTCCTCCCCAAGGCATTCGAATCTAAGTTAGTTCTAGATGTTCACAGTATTAGTTGTGGCTACAGACATGCTGTTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTTGTTGACACTCTTGCTGGCATGAATATTGAGTCAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGACATGGAAATGAAGCCACTCACTGGATTCCTAAAAAAATTAGTGGTAACTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAACTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAAATCATTGTAGTGCAACTATTCCTCAAGAAGTAGAAATTTTGAGAGGGTTTAGAACAACCAAGGTTGCATGTGGTGTTTGGCACACTGCTGCAGTTGTGGAGGCGATAAACGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGATTGTTCACCTGGGGTGACGGAGATAAAGGCCAACTTGGACATGCTGATAGGGAGCCTAGACTAGTTCCTGAGTGTGTAATTGCATTGAGTACTGAAAACATTAGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACATGTATATACAATAGGAAGCACTGCTTATGGGCAACTTGGCTGTCCTGCATCTGATGGAAAAGTCCCTACATGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCAACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTATTTTGTGGTTCAAACTTTACAGCTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTAGAAAAGCTTCCCTTGCTCCCAATACTAGCAAGCCGTATCGAGTTTGCGAGGACTGTTATCTTAAGCTTAAGAAGCCTGCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAATAGAACCACTAAAATACAGGGAACACTATTGAGACTTTCATCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATTGAAGCTTCCAGATTCACAAGATAGCCACCGTTCCCCAGCTTCGAATGGAAAACTAGAAATGAAGGGTTTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTTGATTCTAAGAAAAACCTTCCATTTTCAGAGCCTGCTGCAAGATTATCTTGTCAAACAACATCTCCAGTTTCGTCAAAGTCAAGTCCAAGAGAATCGTATGAGGATATCAATGATGATTTAAAGCATAGAAATGATATTTTAAGTCAAGAAGTTATAATTTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCAAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCTGTAGCTGCAGACGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGGTTGGGTATTCTATACGTTGGGTTGTCTATTCTCCTCTTCTACATTGCTAA 2703 0.4114 MADPQKTALGERDIEQAIAFLKKGSYLLKYGRRGKPKFCPFRLSNDESILLWYSDKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYSDRSLDLICKDKEEAEIWFVGLKALVTRANNRKWFESRTDDSHCSDSPKSSTRRSTPSNTPFSDPGDAGGAAFDVKNRWVKAFSEIISSNAASKSTSQAESIANSSLSSGCVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSLSDVFIWGEGIGNGILGGGVHRVGALSSMDAFLPKAFESKLVLDVHSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLVDTLAGMNIESVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGNEATHWIPKKISGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHCSATIPQEVEILRGFRTTKVACGVWHTAAVVEAINESVESSTRSSSGRLFTWGDGDKGQLGHADREPRLVPECVIALSTENISQVACGHSLTIALTTSGHVYTIGSTAYGQLGCPASDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAAVCLHKWIPSVDHSTCFGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSRKASLAPNTSKPYRVCEDCYLKLKKPAESVPLVQTPSLRSVSLQENRTTKIQGTLLRLSSFGSILQTESSQLKLPDSQDSHRSPASNGKLEMKGFASSKSSNSVFVDSKKNLPFSEPAARLSCQTTSPVSSKSSPRESYEDINDDLKHRNDILSQEVIILRTQVEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQVGYSIRWVVYSPLLHC* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 244 303 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 527 574 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 355 406 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 411 459 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 579 626 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 475 524 IPR000408 -
Pvu3g0691 900 Pfam Regulator of chromosome condensation (RCC1) repeat 304 352 IPR000408 -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 144 158 - -
Pvu3g0691 900 SUPERFAMILY FYVE/PHD zinc finger 630 705 IPR011011 -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Pvu3g0691 900 CDD PH_PLC_plant-like 12 122 - -
Pvu3g0691 900 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 634 696 IPR017455 -
Pvu3g0691 900 Pfam Transcription factor BRX N-terminal domain 866 884 IPR027988 -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 578 629 IPR000408 -
Pvu3g0691 900 SMART fyve_4 626 697 IPR000306 GO:0046872
Pvu3g0691 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 703 IPR013083 -
Pvu3g0691 900 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 741 757 - -
Pvu3g0691 900 CDD FYVE_like_SF 639 692 - -
Pvu3g0691 900 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 449 459 IPR000408 -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 528 577 IPR000408 -
Pvu3g0691 900 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 885 - -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 741 765 - -
Pvu3g0691 900 Pfam FYVE zinc finger 630 696 IPR000306 GO:0046872
Pvu3g0691 900 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 290 300 IPR000408 -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 790 808 - -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Pvu3g0691 900 SUPERFAMILY PH domain-like 13 121 - -
Pvu3g0691 900 Coils Coil 808 863 - -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 789 812 - -
Pvu3g0691 900 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 885 - -
Pvu3g0691 900 Gene3D - 471 637 IPR009091 -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 355 IPR000408 -
Pvu3g0691 900 SUPERFAMILY RCC1/BLIP-II 244 631 IPR009091 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 306 322 IPR000408 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 397 413 IPR000408 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 413 427 IPR000408 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 517 535 IPR000408 -
Pvu3g0691 900 PRINTS Chromosome condensation regulator RCC1 signature 573 594 IPR000408 -
Pvu3g0691 900 MobiDBLite consensus disorder prediction 132 164 - -
Pvu3g0691 900 Gene3D - 367 470 IPR009091 -
Pvu3g0691 900 Gene3D - 174 366 IPR009091 -
Pvu3g0691 900 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 410 IPR000408 -
Pvu3g0691 900 Gene3D - 13 128 IPR011993 -
Pvu3g0691 900 SMART PH_update 21 124 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0691 Pvu-Chr3 9499033 9504804 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0691 - - pvu:PHAVU_003G066900g 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0691 3 9499033 9504804 Pvu3g0691 3 9499033 9504804 ECH