Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0635 ATGAGTGCCTTGAGTTTCAGGGGCTTCACATACATGTTTCTCATTGTATTTCTCATTTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCAGCAGGGACGTCTCAGATGCTGTGTATAAGAAAAAAGGAAAGAATTATGGAAATGGTCACAACAAAAACCATGGTGGAGGAGGATCAAAGCCAAAGCCTCCATCACATAAAGGCACTCCCTCACCACCATATCCACCACCACCTCAAAGAAACACTCCCAAACCACCACCCTCAAATGAGGATAACCCCACAACTCCCCCACCAAAACCTTACAATGGTGGCCATTCTTCTACCACCACCACCTTCAATGTGCTAGATTTTGGTGCCAAGGGAGATGGAAAAACTGATGACACAAAGGCATTTCAAGCAGCTTGGGCTGAAGCTTGCAAAGTAGAGGCATCAACAATGGTGGTTCCATCAGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTTCAGCTTGATGGCACCATTGTTGCACCAACAAACCCCAATGCCTGGGGCAGAGGACTACTACAGTGGTTAGAATTTACTAAGTTGGTGGGAATTACCATTCAAGGAAATGGTATCATTGATGGAAAAGGCTCTGTGTGGTGGCAAGATCATCAATATGATGATCCTATAGATGATGAAGAAAAACTCATAGTCCCTTTAAACCAGACTGTACCAAGTCCCCCACTGCCGATTCAAAGTGAGCTGGGAGGAAAAATGCCATCCGTCAAGCCAACTGCACTGCGGTTCTATGGGAGTTTTAACCCAACAGTTACAGGCATAACAATTCTAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGCAATGGGGTCTTGGTCCATAATGTGAGCATATCATCCCCTGGGAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTATTGATATATGGCAGCACAATGGCATGTGGAGATGACTGTATTTCCATACAAACTGGATGCTCAAACGTATATGTACACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTTTCCAACATTACTGTCAGGGATGTGAACATGCACAACACAATGACTGGCGTCAGAATCAAAACATGGCAGGGAGGGTCAGGCTCTGTGCAAGGAATACTATTCTCAAATATACAAGTTTCTGAAGTTCAATTCCCAATTGTGATCGATCAATTCTACTGCGACAAAAGAACCTGCAAAAACCAAACATCAGCTGTTTCTCTGGCTGGAATCAACTATGAAAGGATAAGGGGGACATACACAGTTATGCCAGTCAACTTTGCCTGCAGTGATAGCCTTCCTTGTGTAGATGTTTCTTTAACGGCTGTTGAGTTGAAACCACTTCAAGAACAAAACCATCTCTATGATCCTTTCTGCTGGCAGACATATGGTGAATTGAAAACTCCAACACTCCCACCAATTGGTTGTCTACAGATTGGGAAGCCCACGAGCAATCGGATTCAGACAGATCATGATTTATGTTGA 1605 0.443 MSALSFRGFTYMFLIVFLIWSSNFEACIARRGKHWRQSSRDVSDAVYKKKGKNYGNGHNKNHGGGGSKPKPPSHKGTPSPPYPPPPQRNTPKPPPSNEDNPTTPPPKPYNGGHSSTTTTFNVLDFGAKGDGKTDDTKAFQAAWAEACKVEASTMVVPSDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGIIDGKGSVWWQDHQYDDPIDDEEKLIVPLNQTVPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITILNSPQCHLKFDNCNGVLVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQGGSGSVQGILFSNIQVSEVQFPIVIDQFYCDKRTCKNQTSAVSLAGINYERIRGTYTVMPVNFACSDSLPCVDVSLTAVELKPLQEQNHLYDPFCWQTYGELKTPTLPPIGCLQIGKPTSNRIQTDHDLC* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0635 534 MobiDBLite consensus disorder prediction 49 121 - -
Pvu3g0635 534 SUPERFAMILY Pectin lyase-like 116 533 IPR011050 -
Pvu3g0635 534 Pfam Pectate lyase superfamily protein 120 145 IPR024535 -
Pvu3g0635 534 SMART pbh1 328 349 IPR006626 -
Pvu3g0635 534 SMART pbh1 208 229 IPR006626 -
Pvu3g0635 534 SMART pbh1 381 402 IPR006626 -
Pvu3g0635 534 SMART pbh1 301 327 IPR006626 -
Pvu3g0635 534 SMART pbh1 351 371 IPR006626 -
Pvu3g0635 534 SMART pbh1 410 431 IPR006626 -
Pvu3g0635 534 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 524 - -
Pvu3g0635 534 PANTHER - 6 524 - -
Pvu3g0635 534 MobiDBLite consensus disorder prediction 73 108 - -
Pvu3g0635 534 Gene3D - 110 519 IPR012334 -
Pvu3g0635 534 ProSitePatterns Polygalacturonase active site. 358 371 IPR000743 GO:0004650|GO:0005975
Pvu3g0635 534 Pfam Glycosyl hydrolases family 28 268 486 IPR000743 GO:0004650|GO:0005975
Pvu3g0635 534 Pfam Glycosyl hydrolases family 28 149 230 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0635 Pvu-Chr3 8320365 8325757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0635 2 534 Glycoside Hydrolase AT1G60590 63.110 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0635 - - gmx:732602 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0635 3 8320365 8325757 Pvu3g0635 3 8320365 8325757 ECH