Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0633 ATGGGGTTGACATTCACCAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAACTTGGAGAGATCGTTACAACAATTCCTACTATTGGGTTCAATGTGGAGACTGTGGAATACAAGAATATTAGCTTCACTGTTTGGGATGTTGGTGGCCAAGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAAAACACACAGGGTCTGATATTTGTTGTAGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTGCATAGGATGTTGAATGAGGATGAACTGAGAGATGCAGTATTGCTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTACTGACAAGCTGGGTCTTCACTCTCTCAGACAACGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTTTATGAGGGTTTGGACTGGCTTTCCAACAACATAGCCAACAAGGCTTAG 546 0.4542 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0633 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Pvu3g0633 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Pvu3g0633 181 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
Pvu3g0633 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Pvu3g0633 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Pvu3g0633 181 SMART arf_sub_2 1 181 - -
Pvu3g0633 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Pvu3g0633 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Pvu3g0633 181 SMART rab_sub_5 18 180 - -
Pvu3g0633 181 Gene3D - 4 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0633 Pvu-Chr3 8289106 8293511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0633 K07937 - jre:109001166 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0633 3 8289106 8293511 Pvu3g0633 3 8289106 8293511 ECH
Pvu2g0731 2 9680534 9683453 Pvu3g0633 3 8289106 8293511 PCT