Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0552 TACGTAGGATTAAACATGTTGATAAAGGCTATCACTGTTGATGCTCAGGCAGTGCAGAGGCATCGTGCAACAATTCTGGAATGTATAAAGGATTCTGATGCTTCAATTCGGAAAAGAGCCCTTGAACTTGTTTGTATTCTGGTGAATGAAACTAATGTGAAGGCCTTAACAATGGTGCTAGTTGACTATCTGGAAGTCAGTGATCCAGATTTCAGGGTAGACCTTACTGAAAAAATTTGTTCAATAGTTTCAAAGTATTCCTCAGAGAAGATCTGGTACATTGATCAGATGCTCAAGGTTCTGTCTGAGGCTGGGAACTTTGTGAAAGATGAAGTTTGGCACGCCTTAATTGTTGTGATAAGCAATGCTTCTGAACTTCATGGATATACAGTAAGAGCATTATACCAGGCATTTCAGAGGTCAGCTGAACAGGAAACTCTTGTTCGCGTTGCAGTGTGGTGCATTGGAGAGTATGGTGACTTCCTGATCAATAATGTTGGAATGCTTGATGTAGAAGATCCAATAACGGTGACCGAGTCAGATGTTGTGCGTGTTGTAGAGATTGCTTTAAAACGCCATTCATCGGATCTTACCACAAAAGCAATGGCTTTGGTTTCCCTATTGAAGCTATCTTCACGGTTTCCTTCTCGTTCAGAGAGAATCAGGGAAATAGTCGTTCAGTACAAAGGCAACTTTGTTTTAGAATTGCAGCAAAGATCCATAGAATTCAATTTGATTATTACGAAGCATCAAAATATTAGGCCTACACTTGTAGACAGGATTCCAGTTCTGGATGAGGCTACTTTCATTGCTAGGAGGGCTGGATCTTTGCCAGATGCAGCTTCAACACGTACAAATGGAGTAGCCAAAGCTGTTAGTCCTATTGTAGATCTCCTTGATATAAATTCAGATGATGCTCCTGTACCAAGCTCTTCAGGTGGTGATCTTCTTCATGACCTTCTTGGTGTCGATCTTTCACTGCCATCACAACAGTCTGATGCTAGTCAAGCCTCAAAAAATGGCCCAGATGTTCTTTTGGATCTTTTGTGTATTGGATCGCCTTCTGCACCAACTGAATTACCTGCACAAAGAAACTCATCTGAAATGGACATATTGTCCCCCAAACCTAGTAAGAAGGCACCGGTTTCACCATTAGATGATCTCGCATCACTTTCACTTTCTTCTAGAGCAACTTTAAATGCTGGAGCTGCTCCCTTGATGGATTCATTAGATGGTTTTGCCCCCAGCCCACCAACAGAAGAAAACAATGAACTGGTTTATCCATCTATAACTGCATTTGAGAGTGGCTCCCTGAGGTTGGTGTTTAATTTCTCAAAACAGCCAGGAAACTTACAGACTACGAATATTCAGGCCACCTTTACAAATTTGACCTCAAATGTATATACAGATTTTGTTTTTCAGGCTGCAGTTCCAAAGTTTCTTCAGTTGCACTTAGATCCAGCTAGCGGCAATATTCTCACTGCTAGTGGAAAGGAGTCCATCAAGCAAAATATGAGACTTACTAATTGCCAACATGGAAAGAAGCCTCTTGTCATGCGCATAAAGGTTGCATACAAGATAAATGGCAAAGAGACACTTGAAGAAGGACAAATCAGCAACTTTCCTCGTGAGTTATGA 1638 0.4121 YVGLNMLIKAITVDAQAVQRHRATILECIKDSDASIRKRALELVCILVNETNVKALTMVLVDYLEVSDPDFRVDLTEKICSIVSKYSSEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASELHGYTVRALYQAFQRSAEQETLVRVAVWCIGEYGDFLINNVGMLDVEDPITVTESDVVRVVEIALKRHSSDLTTKAMALVSLLKLSSRFPSRSERIREIVVQYKGNFVLELQQRSIEFNLIITKHQNIRPTLVDRIPVLDEATFIARRAGSLPDAASTRTNGVAKAVSPIVDLLDINSDDAPVPSSSGGDLLHDLLGVDLSLPSQQSDASQASKNGPDVLLDLLCIGSPSAPTELPAQRNSSEMDILSPKPSKKAPVSPLDDLASLSLSSRATLNAGAAPLMDSLDGFAPSPPTEENNELVYPSITAFESGSLRLVFNFSKQPGNLQTTNIQATFTNLTSNVYTDFVFQAAVPKFLQLHLDPASGNILTASGKESIKQNMRLTNCQHGKKPLVMRIKVAYKINGKETLEEGQISNFPREL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0552 545 Pfam Adaptin C-terminal domain 428 542 IPR008152 GO:0006886|GO:0016192
Pvu3g0552 545 MobiDBLite consensus disorder prediction 358 372 - -
Pvu3g0552 545 PANTHER AP-1 COMPLEX SUBUNIT GAMMA-1 1 545 - -
Pvu3g0552 545 Gene3D - 413 544 - -
Pvu3g0552 545 SMART alpha_adaptinc2 422 542 IPR008152 GO:0006886|GO:0016192
Pvu3g0552 545 MobiDBLite consensus disorder prediction 357 383 - -
Pvu3g0552 545 Gene3D - 1 265 IPR011989 -
Pvu3g0552 545 Pfam Adaptin N terminal region 1 249 IPR002553 GO:0006886|GO:0016192|GO:0030117
Pvu3g0552 545 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 545 - -
Pvu3g0552 545 SUPERFAMILY Clathrin adaptor appendage domain 402 543 IPR013041 -
Pvu3g0552 545 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 425 542 IPR008153 -
Pvu3g0552 545 SUPERFAMILY ARM repeat 1 265 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0552 Pvu-Chr3 6707949 6718057 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0552 K12391 - gmx:100817075 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0752 2 10321938 10339638 Pvu3g0552 3 6707949 6718057 PCT