Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0544 ATGGCGGATGAGAGCGTTGTTGAGTCCCCAGTGAAGAGACAGAAAGATGGTGAAGAAAATGGGGCCTCTGTTTCCATGGATACGGAGGGTGGCAAAGACCCTCAGGGTAATGGTTTATCGTCTGTGATTCCTGGCTGGTTCTCTGAAATCAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAAATTTTGTTTCAAGGAAAGTCTGAATACCAGAATATCATGGTCTTCCAGTCGTCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTAATCCAGTTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGAGGCGGTGATGGAGGAGTCCTCCGAGAAATAGCACGCCATTCTTCAGTTGAAAAGATAGATATTTGTGAAATTGACGGCATGGTTGTTGATGTCTCCAAACAGTATTTCCCTGATGTAGCTGTAGGGTATGAGGATCCTCGTGTGACACTTACTGTTGGTGATGGAGTTGCGTTTCTGAAGAATGTTCCTGAAGGAACTTATGATGCTGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAGGAGCTATTTGAAAAGCCCTTCTTTGGGTCAGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATCGTGTCAAATTGTCGCCACATTTTTAAAGGATCTGTTAACTATGCTTGGACTACTGTTCCTACATATCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTATTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAGGAGTGTCAGAAATCAGCAAGACCACTAAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCATTTGCAAAGAGGAAGATTGGTCCTAAAGCAAATTAG 1005 0.4328 MADESVVESPVKRQKDGEENGASVSMDTEGGKDPQGNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNIMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREIARHSSVEKIDICEIDGMVVDVSKQYFPDVAVGYEDPRVTLTVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFGSVAKALRPGGVVCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPIDFKHPVNPIDEKECQKSARPLKFYNSEIHTAAFCLPSFAKRKIGPKAN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0544 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Pvu3g0544 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Pvu3g0544 334 MobiDBLite consensus disorder prediction 1 38 - -
Pvu3g0544 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Pvu3g0544 334 PANTHER SPERMIDINE SYNTHASE-RELATED 1 334 - -
Pvu3g0544 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 334 IPR001045 GO:0003824
Pvu3g0544 334 CDD AdoMet_MTases 122 233 - -
Pvu3g0544 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
Pvu3g0544 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Pvu3g0544 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Pvu3g0544 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Pvu3g0544 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Pvu3g0544 334 MobiDBLite consensus disorder prediction 1 22 - -
Pvu3g0544 334 TIGRFAM speE: spermidine synthase 46 324 IPR001045 GO:0003824
Pvu3g0544 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0544 Pvu-Chr3 6563253 6567258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0544 K00797 - gmx:100812978 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0544 3 6563253 6567258 Pvu3g0544 3 6563253 6567258 ECH
Pvu2g0748 2 10195965 10199040 Pvu3g0544 3 6563253 6567258 PCT